View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1579_low_26 (Length: 389)

Name: NF1579_low_26
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1579_low_26
NF1579_low_26
[»] chr1 (8 HSPs)
chr1 (1-373)||(48655576-48655947)
chr1 (211-368)||(48628118-48628275)
chr1 (218-366)||(48652320-48652468)
chr1 (176-368)||(48660734-48660926)
chr1 (211-368)||(48618985-48619142)
chr1 (211-364)||(48666361-48666514)
chr1 (211-373)||(48584535-48584697)
chr1 (211-368)||(11546424-11546581)
[»] chr3 (1 HSPs)
chr3 (266-373)||(19666336-19666443)
[»] chr8 (2 HSPs)
chr8 (211-319)||(27223157-27223265)
chr8 (211-363)||(27227348-27227500)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 48655576 - 48655947
Alignment:
Q  1 ttatttattactttatgcttctactaaaataactactacattnnnnnnnnctactacatgagctctccacctaataagcagagtactttctctttttgga 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48655576 ttatttattactttatgcttctaataaaataactactacattaaaaaaa-ctactacatgagctctccacctaataagcagagtactttctctttttgga 48655674  T
Q  101 attttcatacctaaatttattaacccctaggatagcatttgggtgacattgtttccgctatgggtagtttatcatatcttctgaaaattaacagcgcctt 200  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48655675 attttcatacctaaatttattatcccctaggatagcacttgggtgaaattgtttcccctatgggtagtttatcatatcttctgaaaattaacagcgcctt 48655774  T
Q  201 gtttcgcaacgtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcattttt 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48655775 gtttcgcaacttcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcattttt 48655874  T
Q  301 cttcaactcctctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaat 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48655875 cttcaactcctctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaat 48655947  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 211 - 368
Target Start/End: Original strand, 48628118 - 48628275
Alignment:
Q  211 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 310  Q
    |||||| ||||||||||||||||  |  || ||||||||||| ||||| ||||| ||||| ||  ||||||||||||| |||||||||||||||||||||    
T  48628118 gtcttccataaatgcatcaagattccaatcagaggatccaccaacggccactgcttcctctgcctccttcttccacttcattgcatttttcttcaactcc 48628217  T
Q  311 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgtta 368  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  48628218 tctgctttttcccctgttgttgcttccaataagcacttcttcacctcatctcttgtta 48628275  T

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Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 218 - 366
Target Start/End: Original strand, 48652320 - 48652468
Alignment:
Q  218 ataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcctctgctt 317  Q
    ||||||||||||||||   | || || |||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48652320 ataaatgcatcaagatgcagatcagatgatccacctatggcaaccgcatcctccgctgctttcttccacttgattgcatttttcttcaactcctctgctt 48652419  T
Q  318 tttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgt 366  Q
    ||||||| |   | |||||||||||||||||||||||||||||||||||    
T  48652420 tttccccagccattgcttccaacaagcacttcttcacctcatctcttgt 48652468  T

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Target: chr1; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 176 - 368
Target Start/End: Original strand, 48660734 - 48660926
Alignment:
Q  176 atcttctgaaaattaacagcgccttgtttcgcaacgtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctg 275  Q
    |||||||||| |||| ||| ||| ||||||  || ||||| ||||||||||||||||| |||||| ||||| ||||| || || |  |||||||| ||||    
T  48660734 atcttctgaatattaccagtgccatgtttcttaatgtcttggataaatgcatcaagatgtcggtccgaggaaccaccgactgccatcgcatcctctgctg 48660833  T
Q  276 ccttcttccacttgattgcatttttcttcaactcctctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgtta 368  Q
    || |||||||||| ||||||||||  ||||||  ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  48660834 ccgtcttccacttcattgcattttgtttcaacctctctgctttttcccctgttattgcttccaataagcacttcttcacctcatctcttgtta 48660926  T

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Target: chr1; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 211 - 368
Target Start/End: Complemental strand, 48619142 - 48618985
Alignment:
Q  211 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 310  Q
    |||||| |||||| |||||||||  || || ||||||||||| | ||| ||||| || |||||   |||||||||||| |||||||||||||||||||||    
T  48619142 gtcttccataaattcatcaagattccgatcagaggatccaccaatggccactgcttcatccgccttcttcttccacttcattgcatttttcttcaactcc 48619043  T
Q  311 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgtta 368  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  48619042 tctgctttttcccctgttgtagcttccaataaacactttttcacctcatctcttgtta 48618985  T

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Target: chr1; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 211 - 364
Target Start/End: Original strand, 48666361 - 48666514
Alignment:
Q  211 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 310  Q
    |||||| |||||||||||||||| |||||| ||||| ||||| || || ||||| |||||||| ||||| ||| ||||| |||||||||||||||||  |    
T  48666361 gtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttcttcaacgtc 48666460  T
Q  311 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctctt 364  Q
    ||||||||||||||||||||| ||||||| ||||| ||||| |  |||||||||    
T  48666461 tctgctttttcccctgttgtaacttccaataagcatttctttaaatcatctctt 48666514  T

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Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 373
Target Start/End: Original strand, 48584535 - 48584697
Alignment:
Q  211 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 310  Q
    |||||| |||||  |||||||||  || || ||||||||||| ||||| |  || ||||||||   ||||||||||||| ||||||||| |||||||| |    
T  48584535 gtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttgtttgcattttgcttcaacttc 48584634  T
Q  311 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaat 373  Q
    ||||||||||| ||| |||| |||||||| || ||||||||||||||||||||||||| ||||    
T  48584635 tctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaat 48584697  T

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Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 368
Target Start/End: Original strand, 11546424 - 11546581
Alignment:
Q  211 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 310  Q
    |||||| | |||| |||||||||  || || ||||||||||| | ||| ||||| ||||| ||    ||||||||||| ||||||||||||||||| |||    
T  11546424 gtcttccaaaaattcatcaagattccgatcagaggatccaccaatggccactgcttcctcagcctttttcttccactttattgcatttttcttcaaatcc 11546523  T
Q  311 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgtta 368  Q
    || |||||||||||| |||| ||||| || |||||||| |||||||||||||||||||    
T  11546524 tcagctttttcccctattgttgcttctaataagcactttttcacctcatctcttgtta 11546581  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 19666443 - 19666336
Alignment:
Q  266 tcctccgctgccttcttccacttgattgcatttttcttcaactcctctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttg 365  Q
    |||||||| || |||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| |||||||| |||||||||||||| ||||||||||    
T  19666443 tcctccgccgctttcttccacttgattgcattttgcttcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctcttg 19666344  T
Q  366 ttatcaat 373  Q
    ||| ||||    
T  19666343 ttaccaat 19666336  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 27223157 - 27223265
Alignment:
Q  211 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 310  Q
    |||||| |||||||||||||||| | | || ||||||||||||| |||||| ||| |||| ||||||||||||||||||||||| |||| ||||||||||    
T  27223157 gtcttccataaatgcatcaagatgttgatcagaggatccacctatggcaacagcagcctctgctgccttcttccacttgattgcgttttgcttcaactcc 27223256  T
Q  311 tctgctttt 319  Q
    |||||||||    
T  27223257 tctgctttt 27223265  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 211 - 363
Target Start/End: Original strand, 27227348 - 27227500
Alignment:
Q  211 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 310  Q
    |||||| ||||||||||||| ||  || || ||||| |||||||| ||||||||| |||||||||||||||||||||||||||  |||| |||||||  |    
T  27227348 gtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgcttcaacatc 27227447  T
Q  311 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctct 363  Q
    |||||||||  |||||   | |||||||| ||||| |||||||||||||||||    
T  27227448 tctgcttttggccctgccattgcttccaataagcatttcttcacctcatctct 27227500  T

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