View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_27 (Length: 382)
Name: NF1579_low_27
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 38700118 - 38699849
Alignment:
| Q |
19 |
ggagatagagtggttgattttattttaagtgctcatataattgagccagatcaacaaatcttgaaactcaatgatttgttctatttcaaagttattataa |
118 |
Q |
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| T |
38700118 |
ggagatagagcggttgattttattttaagtgctcatataattgagccagatcaacaaatcttgaaactcaatgatttgttctatttcaaagttattataa |
38700019 |
T |
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| Q |
119 |
accttcaaaatttctaaactaactcaccaaattcaacacaaatcaaccttcatgagtttcacaagtgcttctttcaacacgattaagatttcttaaagtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38700018 |
accttcaaaatttctaaactaactcaccaaattcaacacaaatcaaccttcatgagtttcacaagtgcttctttcaacacgattaagatttcttaaagtt |
38699919 |
T |
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| Q |
219 |
atatatacaaaattcatgttcttgtcgtaattcatttataaaagtctttccaaacgggcttgcatgcata |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38699918 |
atatatacaaaattcatgttcttgtcgtaattcatttataaaagtcattccaaacgggcttgcatgcata |
38699849 |
T |
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