View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1579_low_3 (Length: 675)

Name: NF1579_low_3
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1579_low_3
NF1579_low_3
[»] chr3 (1 HSPs)
chr3 (22-657)||(53663478-53664113)


Alignment Details
Target: chr3 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 22 - 657
Target Start/End: Original strand, 53663478 - 53664113
Alignment:
Q  22 aataaaataggttacaagaagaagaagagaaagtaaatatattattcacacaatcatacctcatcatgctaccctgaatatcagaatcttgaggactcgc 121  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| |    
T  53663478 aataaaataggttacaagaaggagaagagcaagtaaatatattattcacgcaatcatacctcatcatgttgccctgaatatcagaatcttgaggactcac 53663577  T
Q  122 tttattttgtgaatttgaatgaagggatttacaagtcaccccagaagcagagcgaacctgcataaaatatttattgccaagatctagcaaatcaatttgc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53663578 tttattttgtgaatttgaatgaagggatttacaagtcaccccagaagcagagcaaacctgcataaaatatttattgccaagatctagcaaatcaatttgc 53663677  T
Q  222 taatgcaagtaggtaccagcaaagtttccatagcctgataaaacgaagaaattaattttctagacactaatgacatcagaacataaaaagttccttcata 321  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  53663678 taatgcaggtaggtaccagcaaagtttccatagcctgataaaacgaagaaattaattttctagacactaatgacatcagaacataaaaatttccttcata 53663777  T
Q  322 ggaagcatgcaatgactaattaacagtaaatatattgaactacaataactaaaagagagaaatgtgtgaaattaaaacaatgaaataatttagaagagca 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53663778 ggaagcatgcaatgactaattaacagtaaatatattgaactacaataactaaaagagagaaatgtgtgaaattaaaacaatgaaataatttagaagagca 53663877  T
Q  422 aattatgtctaggtctacttttcttttcaagaaaattttcaaatattataatctcattatgattcttaaatgatgactagttaatgcataaatcattacc 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  53663878 aattatgtctaggtctacttttcttttcaagaaaattttcaaatattataatctcattatgattctgaaatgatgactagttaatgcataaatcactacc 53663977  T
Q  522 gcttggacaagccggaatacaactgcaggtccagtagatgcagctggggttcgtgcaatgtgcagtatccttttatgcataatgacatattgagccctct 621  Q
     |||| ||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  53663978 acttgtacaagacggacttcaactgcaggtccagtagatgcagctggggttcgtgcaatgtgcagtaaccttttatgcataaggacatattgagccctct 53664077  T
Q  622 ccacattcatatccaatgcatacctaaagtgtattg 657  Q
    ||||||||||||||||||||||||||||||||||||    
T  53664078 ccacattcatatccaatgcatacctaaagtgtattg 53664113  T

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