View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1579_low_31 (Length: 377)

Name: NF1579_low_31
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1579_low_31
NF1579_low_31
[»] chr2 (31 HSPs)
chr2 (179-219)||(14793478-14793518)
chr2 (46-102)||(35886714-35886770)
chr2 (181-219)||(32845685-32845723)
chr2 (181-219)||(36944253-36944291)
chr2 (321-366)||(758664-758709)
chr2 (66-115)||(35905935-35905984)
chr2 (183-219)||(8214582-8214618)
chr2 (183-219)||(24952078-24952114)
chr2 (182-218)||(33441502-33441538)
chr2 (183-219)||(43766504-43766540)
chr2 (184-219)||(7327767-7327802)
chr2 (184-219)||(28739407-28739442)
chr2 (184-219)||(32845456-32845491)
chr2 (177-219)||(10374131-10374173)
chr2 (181-215)||(13692002-13692036)
chr2 (185-219)||(17920251-17920285)
chr2 (185-219)||(29640763-29640797)
chr2 (185-219)||(38358514-38358548)
chr2 (181-219)||(39341262-39341300)
chr2 (177-219)||(39341378-39341420)
chr2 (178-219)||(8898292-8898333)
chr2 (182-219)||(40385240-40385277)
chr2 (174-219)||(41611583-41611628)
chr2 (185-218)||(44610927-44610960)
chr2 (182-218)||(5856293-5856329)
chr2 (183-219)||(8214341-8214377)
chr2 (175-219)||(8467465-8467509)
chr2 (183-219)||(14793250-14793286)
chr2 (183-219)||(24951902-24951938)
chr2 (321-365)||(38358415-38358458)
chr2 (183-219)||(41101033-41101069)
[»] chr4 (26 HSPs)
chr4 (180-219)||(12878670-12878709)
chr4 (177-219)||(3475478-3475520)
chr4 (181-219)||(13033149-13033187)
chr4 (179-219)||(6439179-6439219)
chr4 (183-219)||(12144543-12144579)
chr4 (183-219)||(33294939-33294975)
chr4 (183-219)||(36405657-36405693)
chr4 (184-219)||(1952734-1952769)
chr4 (184-219)||(26144157-26144192)
chr4 (184-219)||(35370411-35370446)
chr4 (184-219)||(36405876-36405911)
chr4 (184-219)||(46360916-46360951)
chr4 (184-219)||(47858452-47858487)
chr4 (184-219)||(54097099-54097134)
chr4 (181-219)||(3475717-3475755)
chr4 (181-219)||(35804089-35804127)
chr4 (180-218)||(40450253-40450291)
chr4 (185-218)||(4431292-4431325)
chr4 (182-219)||(15782259-15782296)
chr4 (186-219)||(20514910-20514943)
chr4 (182-219)||(35904875-35904912)
chr4 (321-349)||(3525797-3525825)
chr4 (183-219)||(6439444-6439480)
chr4 (183-219)||(13032885-13032921)
chr4 (183-219)||(28292051-28292087)
chr4 (183-215)||(34318663-34318695)
[»] chr1 (17 HSPs)
chr1 (172-219)||(23889664-23889711)
chr1 (175-219)||(10176427-10176471)
chr1 (183-219)||(16555323-16555359)
chr1 (180-219)||(16555552-16555591)
chr1 (184-219)||(26486792-26486827)
chr1 (184-219)||(52413120-52413155)
chr1 (185-219)||(7454889-7454923)
chr1 (178-219)||(15961577-15961619)
chr1 (177-219)||(21771063-21771105)
chr1 (185-219)||(35384479-35384513)
chr1 (185-219)||(37847794-37847828)
chr1 (185-219)||(39160555-39160589)
chr1 (182-215)||(13296043-13296076)
chr1 (185-218)||(27142828-27142861)
chr1 (183-216)||(39657271-39657304)
chr1 (183-219)||(31974775-31974811)
chr1 (183-219)||(35168031-35168067)
[»] chr8 (14 HSPs)
chr8 (177-219)||(21692628-21692670)
chr8 (182-219)||(23564099-23564136)
chr8 (183-219)||(22686741-22686777)
chr8 (183-219)||(45530500-45530536)
chr8 (184-219)||(41708827-41708862)
chr8 (184-219)||(43383013-43383048)
chr8 (185-219)||(3785525-3785559)
chr8 (181-219)||(11961126-11961164)
chr8 (185-219)||(18367026-18367060)
chr8 (185-219)||(19158190-19158224)
chr8 (181-219)||(38132084-38132122)
chr8 (183-219)||(30222110-30222146)
chr8 (183-219)||(31343625-31343661)
chr8 (179-219)||(34227321-34227361)
[»] chr7 (12 HSPs)
chr7 (181-219)||(45639747-45639785)
chr7 (321-366)||(3624042-3624087)
chr7 (321-366)||(24732909-24732953)
chr7 (183-219)||(43596535-43596571)
chr7 (184-219)||(18655375-18655410)
chr7 (184-219)||(28000141-28000176)
chr7 (184-219)||(31417525-31417560)
chr7 (184-219)||(44412555-44412590)
chr7 (182-219)||(10659729-10659766)
chr7 (183-216)||(21852763-21852796)
chr7 (187-219)||(15108090-15108122)
chr7 (182-218)||(47973882-47973918)
[»] chr3 (23 HSPs)
chr3 (181-219)||(1351490-1351528)
chr3 (181-219)||(1421561-1421599)
chr3 (181-219)||(11761078-11761116)
chr3 (177-219)||(35434095-35434137)
chr3 (181-219)||(39846603-39846641)
chr3 (177-219)||(48418646-48418688)
chr3 (174-219)||(55090266-55090311)
chr3 (183-219)||(29853650-29853686)
chr3 (184-219)||(17261024-17261059)
chr3 (183-218)||(33898296-33898331)
chr3 (184-219)||(35359471-35359506)
chr3 (183-218)||(46994115-46994150)
chr3 (184-219)||(54012611-54012646)
chr3 (176-219)||(54087753-54087796)
chr3 (181-219)||(3820490-3820528)
chr3 (177-219)||(19301171-19301213)
chr3 (181-219)||(31341464-31341502)
chr3 (185-219)||(33898073-33898107)
chr3 (185-219)||(40066706-40066740)
chr3 (182-219)||(30451554-30451591)
chr3 (181-217)||(21549746-21549782)
chr3 (183-219)||(21550004-21550040)
chr3 (176-219)||(23526721-23526765)
[»] scaffold0053 (1 HSPs)
scaffold0053 (178-219)||(29900-29941)
[»] chr6 (13 HSPs)
chr6 (178-219)||(25562147-25562188)
chr6 (178-219)||(26101661-26101702)
chr6 (184-219)||(7017069-7017104)
chr6 (180-219)||(27967461-27967500)
chr6 (185-219)||(7017321-7017355)
chr6 (185-219)||(7313451-7313485)
chr6 (184-218)||(31826214-31826248)
chr6 (184-218)||(33225441-33225475)
chr6 (185-219)||(33352638-33352672)
chr6 (186-219)||(19417947-19417980)
chr6 (179-219)||(21604377-21604418)
chr6 (182-219)||(24602427-24602464)
chr6 (179-219)||(19376213-19376253)
[»] chr5 (10 HSPs)
chr5 (179-216)||(5661900-5661937)
chr5 (184-219)||(2724483-2724518)
chr5 (185-219)||(4633954-4633988)
chr5 (185-219)||(9672897-9672931)
chr5 (185-219)||(10598319-10598353)
chr5 (185-219)||(13012435-13012469)
chr5 (185-219)||(13083845-13083879)
chr5 (181-219)||(28593547-28593585)
chr5 (185-219)||(36518882-36518916)
chr5 (176-219)||(9673152-9673196)
[»] scaffold0192 (1 HSPs)
scaffold0192 (184-219)||(14470-14505)
[»] scaffold0013 (1 HSPs)
scaffold0013 (182-219)||(149482-149519)
[»] scaffold0001 (1 HSPs)
scaffold0001 (182-219)||(53545-53582)
[»] scaffold0318 (1 HSPs)
scaffold0318 (183-219)||(12396-12432)


Alignment Details
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 14793518 - 14793478
Alignment:
Q  179 aatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  14793518 aatttagggttaatggtgctttaccccctgtaatataggtc 14793478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 35886770 - 35886714
Alignment:
Q  46 catagggtctcatcactagagaaaatatacttcatacgttcctctgctaggttataa 102  Q
    ||||||||| ||| ||||||||||||||||||||||  ||| |||||||||||||||    
T  35886770 catagggtcacattactagagaaaatatacttcatatattcttctgctaggttataa 35886714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 32845723 - 32845685
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  32845723 tttagggttaatggtgctttaccccctgtaatataggtc 32845685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 36944291 - 36944253
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  36944291 tttagggttaatggtgctttaccccctgtaatataggtc 36944253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 758664 - 758709
Alignment:
Q  321 gaaattttcgtttttgaatgacctattagcagggtattcgaaaaca 366  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||    
T  758664 gaaattttcgtttttgaatgacctattaggggggtattccaaaaca 758709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 35905984 - 35905935
Alignment:
Q  66 gaaaatatacttcatacgttcctctgctaggttataataacctccttggg 115  Q
    |||||| |||||||||| ||  ||||||||||||||||||||||||||||    
T  35905984 gaaaatgtacttcatacatttttctgctaggttataataacctccttggg 35905935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 8214618 - 8214582
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8214618 tagggttaatggtgctttaccccctgtaatataggtc 8214582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 24952114 - 24952078
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  24952114 tagggttaatggtgctttaccccctgtaatataggtc 24952078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 33441502 - 33441538
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggt 218  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33441502 ttagggttaatggtgctttaccccctgtaatataggt 33441538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 43766540 - 43766504
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  43766540 tagggttaatggtgctttaccccctgtaatataggtc 43766504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 7327767 - 7327802
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  7327767 agggttaatggtgctttaccccctgtaatataggtc 7327802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 28739407 - 28739442
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  28739407 agggttaatggtgctttaccccctgtaatataggtc 28739442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 32845456 - 32845491
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  32845456 agggttaatggtgctttaccccctgtaatataggtc 32845491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 10374131 - 10374173
Alignment:
Q  177 aaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||  ||||| ||||||||||||||||||||    
T  10374131 aaaatttagggttaacagtgctttaccccctgtaatataggtc 10374173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 13692036 - 13692002
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatata 215  Q
    |||||||||||||||||| ||||||||||||||||    
T  13692036 tttagggttaatggtgctttaccccctgtaatata 13692002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 17920285 - 17920251
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  17920285 gggttaatggtgctttaccccctgtaatataggtc 17920251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 29640763 - 29640797
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  29640763 gggttaatggtgctttaccccctgtaatataggtc 29640797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 38358548 - 38358514
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  38358548 gggttaatggtgctttaccccctgtaatataggtc 38358514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 39341262 - 39341300
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  39341262 tttagggttaatggtgttttaccccctgtaatataggtc 39341300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 39341420 - 39341378
Alignment:
Q  177 aaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||| ||||||||||||||| | ||||||||||||||||||||    
T  39341420 aaaaattagggttaatggtgttttaccccctgtaatataggtc 39341378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 8898292 - 8898333
Alignment:
Q  178 aaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||| |||||||||||||||| ||||| ||||||||||||||    
T  8898292 aaatatagggttaatggtgctttaccctctgtaatataggtc 8898333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 40385240 - 40385277
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  40385240 ttagagttaatggtgctttaccccctgtaatataggtc 40385277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 41611628 - 41611583
Alignment:
Q  174 caaaaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||| | ||||||||||||| | ||||||||||||||||||||    
T  41611628 caaaaaagtgagggttaatggtgttttaccccctgtaatataggtc 41611583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 44610927 - 44610960
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggt 218  Q
    |||||||||||||| |||||||||||||||||||    
T  44610927 gggttaatggtgctttaccccctgtaatataggt 44610960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 5856329 - 5856293
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggt 218  Q
    |||| |||||||||||| |||||||||||||||||||    
T  5856329 ttagtgttaatggtgctttaccccctgtaatataggt 5856293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 8214341 - 8214377
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| | ||||||||||||||||||||    
T  8214341 tagggttaatggtgttttaccccctgtaatataggtc 8214377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 8467509 - 8467465
Alignment:
Q  175 aaaaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||| |||||||||||| |||| | ||||||||||||||||||||    
T  8467509 aaaatatttagggttaacggtgttttaccccctgtaatataggtc 8467465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 14793250 - 14793286
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| | ||||||||||||||||||||    
T  14793250 tagggttaatggtgttttaccccctgtaatataggtc 14793286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 24951902 - 24951938
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| || |||||||||||||||||    
T  24951902 tagggttaatggtgctttaacccctgtaatataggtc 24951938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 38358415 - 38358458
Alignment:
Q  321 gaaattttcgtttttgaatgacctattagcagggtattcgaaaac 365  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||    
T  38358415 gaaattttcatttttgaatgacctattag-ggggtattcgaaaac 38358458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 41101069 - 41101033
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  41101069 tagggttaatagtgctttaccccctgtaatataggtc 41101033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 12878670 - 12878709
Alignment:
Q  180 atttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  12878670 atttagggttaatggtgctttaccccctgtaatataggtc 12878709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 3475478 - 3475520
Alignment:
Q  177 aaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  3475478 aaaaattagggttaatggtgctttaccccctgtaatataggtc 3475520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 13033187 - 13033149
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13033187 tttagggttaatggtgctttaccccctgtaatataggtc 13033149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 6439179 - 6439219
Alignment:
Q  179 aatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  6439179 aatttagggttaatagtgctttaccccctgtaatataggtc 6439219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 12144543 - 12144579
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  12144543 tagggttaatggtgctttaccccctgtaatataggtc 12144579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 33294939 - 33294975
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  33294939 tagggttaatggtgctttaccccctgtaatataggtc 33294975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 36405657 - 36405693
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  36405657 tagggttaatggtgctttaccccctgtaatataggtc 36405693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 1952734 - 1952769
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  1952734 agggttaatggtgctttaccccctgtaatataggtc 1952769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 26144157 - 26144192
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  26144157 agggttaatggtgctttaccccctgtaatataggtc 26144192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 35370446 - 35370411
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  35370446 agggttaatggtgctttaccccctgtaatataggtc 35370411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 36405911 - 36405876
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  36405911 agggttaatggtgctttaccccctgtaatataggtc 36405876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 46360951 - 46360916
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  46360951 agggttaatggtgctttaccccctgtaatataggtc 46360916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 47858487 - 47858452
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  47858487 agggttaatggtgctttaccccctgtaatataggtc 47858452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 54097099 - 54097134
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  54097099 agggttaatggtgctttaccccctgtaatataggtc 54097134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 3475755 - 3475717
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  3475755 tttagggttaatggtgctttgccccctgtaatataggtc 3475717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 35804127 - 35804089
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  35804127 tttagggttaatggtgctttacaccctgtaatataggtc 35804089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 40450253 - 40450291
Alignment:
Q  180 atttagggttaatggtgctgtaccccctgtaatataggt 218  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  40450253 atttagggttaatggtgttttaccccctgtaatataggt 40450291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 4431292 - 4431325
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggt 218  Q
    |||||||||||||| |||||||||||||||||||    
T  4431292 gggttaatggtgctttaccccctgtaatataggt 4431325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 15782259 - 15782296
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  15782259 ttagggttaatggtgctttaccccttgtaatataggtc 15782296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 20514943 - 20514910
Alignment:
Q  186 ggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||| ||||||||||||||||||||    
T  20514943 ggttaatggtgctttaccccctgtaatataggtc 20514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 35904912 - 35904875
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  35904912 ttagggttaatggtgctttactccctgtaatataggtc 35904875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 349
Target Start/End: Original strand, 3525797 - 3525825
Alignment:
Q  321 gaaattttcgtttttgaatgacctattag 349  Q
    |||||||||||||||||||||||||||||    
T  3525797 gaaattttcgtttttgaatgacctattag 3525825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 6439480 - 6439444
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  6439480 tagggttattggtgctttaccccctgtaatataggtc 6439444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 13032885 - 13032921
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| | ||||||||||||||||||||    
T  13032885 tagggttaatggtgttttaccccctgtaatataggtc 13032921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 28292051 - 28292087
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| | ||||||||||||||||||||    
T  28292051 tagggttaatggtgttttaccccctgtaatataggtc 28292087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 34318695 - 34318663
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatata 215  Q
    |||||||||||||||| ||||||||||||||||    
T  34318695 tagggttaatggtgctttaccccctgtaatata 34318663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 23889664 - 23889711
Alignment:
Q  172 tacaaaaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  23889664 tacataaaatttagggttaaaggtgctttaccccctgtaatataggtc 23889711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 10176427 - 10176471
Alignment:
Q  175 aaaaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||    
T  10176427 aaaaaatatagggttaatggtgctttaccccccgtaatataggtc 10176471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 16555323 - 16555359
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  16555323 tagggttaatggtgctttaccccctgtaatataggtc 16555359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 16555591 - 16555552
Alignment:
Q  180 atttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  16555591 atttagggttaatggtgctttactccctgtaatataggtc 16555552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 26486827 - 26486792
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  26486827 agggttaatggtgctttaccccctgtaatataggtc 26486792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 52413120 - 52413155
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  52413120 agggttaatggtgctttaccccctgtaatataggtc 52413155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 7454889 - 7454923
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  7454889 gggttaatggtgctttaccccctgtaatataggtc 7454923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 15961577 - 15961619
Alignment:
Q  178 aaatttagggttaatggtgctgta-ccccctgtaatataggtc 219  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  15961577 aaatttagggttaatggtgctttacccccctgtaatataggtc 15961619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 21771105 - 21771063
Alignment:
Q  177 aaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||    
T  21771105 aaaatatagggttaatagtgctttaccccctgtaatataggtc 21771063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 35384513 - 35384479
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  35384513 gggttaatggtgctttaccccctgtaatataggtc 35384479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 37847828 - 37847794
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  37847828 gggttaatggtgctttaccccctgtaatataggtc 37847794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 39160589 - 39160555
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  39160589 gggttaatggtgctttaccccctgtaatataggtc 39160555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 13296076 - 13296043
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatata 215  Q
    ||||||||||||||||| ||||||||||||||||    
T  13296076 ttagggttaatggtgctttaccccctgtaatata 13296043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 27142861 - 27142828
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggt 218  Q
    |||||||||||||| |||||||||||||||||||    
T  27142861 gggttaatggtgctttaccccctgtaatataggt 27142828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 39657271 - 39657304
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatatag 216  Q
    |||||||||||||||| |||||||||||||||||    
T  39657271 tagggttaatggtgctttaccccctgtaatatag 39657304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 31974775 - 31974811
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||| || ||||||||||||||||||||    
T  31974775 tagggttaatggtactttaccccctgtaatataggtc 31974811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 35168067 - 35168031
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  35168067 tagggttaatagtgctttaccccctgtaatataggtc 35168031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 21692670 - 21692628
Alignment:
Q  177 aaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||| ||||||||||||||| ||||||||||||||||||||    
T  21692670 aaaattaagggttaatggtgctttaccccctgtaatataggtc 21692628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 23564099 - 23564136
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  23564099 ttagggttaatggtgctttaccccctgtaatataggtc 23564136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 22686741 - 22686777
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  22686741 tagggttaatggtgctttaccccctgtaatataggtc 22686777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 45530500 - 45530536
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  45530500 tagggttaatggtgctttaccccctgtaatataggtc 45530536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 41708827 - 41708862
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41708827 agggttaatggtgctttaccccctgtaatataggtc 41708862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 43383048 - 43383013
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  43383048 agggttaatggtgctttaccccctgtaatataggtc 43383013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 3785525 - 3785559
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  3785525 gggttaatggtgctttaccccctgtaatataggtc 3785559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 11961164 - 11961126
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  11961164 tttagggttaatggtggtttaccccctgtaatataggtc 11961126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 18367026 - 18367060
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  18367026 gggttaatggtgctttaccccctgtaatataggtc 18367060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 19158224 - 19158190
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  19158224 gggttaatggtgctttaccccctgtaatataggtc 19158190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 38132122 - 38132084
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  38132122 tttagggttaatggtgttttaccccctgtaatataggtc 38132084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 30222146 - 30222110
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  30222146 tagggttaatagtgctttaccccctgtaatataggtc 30222110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 31343661 - 31343625
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| |||||| |||||||||||||    
T  31343661 tagggttaatggtgctttaccccatgtaatataggtc 31343625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 34227321 - 34227361
Alignment:
Q  179 aatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||| | ||||||||||||||||||||    
T  34227321 aatttagggttaatagtgttttaccccctgtaatataggtc 34227361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 45639785 - 45639747
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  45639785 tttagggttaatggtgctttaccccctgtaatataggtc 45639747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 3624087 - 3624042
Alignment:
Q  321 gaaattttcgtttttgaatgacctattagcagggtattcgaaaaca 366  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||    
T  3624087 gaaattttcgtttttgaatgacctattagaggggtattccaaaaca 3624042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 24732953 - 24732909
Alignment:
Q  321 gaaattttcgtttttgaatgacctattagcagggtattcgaaaaca 366  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||    
T  24732953 gaaattttcgtttttgaatgacctatta-cagggtattctaaaaca 24732909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 43596571 - 43596535
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  43596571 tagggttaatggtgctttaccccctgtaatataggtc 43596535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 18655375 - 18655410
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  18655375 agggttaatggtgctttaccccctgtaatataggtc 18655410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 28000176 - 28000141
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  28000176 agggttaatggtgctttaccccctgtaatataggtc 28000141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 31417560 - 31417525
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31417560 agggttaatggtgctttaccccctgtaatataggtc 31417525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 44412590 - 44412555
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  44412590 agggttaatggtgctttaccccctgtaatataggtc 44412555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 10659729 - 10659766
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  10659729 ttagggttaatggtgctttaccccctgcaatataggtc 10659766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 21852763 - 21852796
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatatag 216  Q
    |||||||||||||||| |||||||||||||||||    
T  21852763 tagggttaatggtgctttaccccctgtaatatag 21852796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 15108090 - 15108122
Alignment:
Q  187 gttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||| ||||||||||||||||||||    
T  15108090 gttaatggtgctttaccccctgtaatataggtc 15108122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 47973918 - 47973882
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggt 218  Q
    ||||||||||||||||| || ||||||||||||||||    
T  47973918 ttagggttaatggtgctttatcccctgtaatataggt 47973882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 1351528 - 1351490
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  1351528 tttagggttaatggtgctttaccccctgtaatataggtc 1351490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 1421599 - 1421561
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  1421599 tttagggttaatggtgatgtaccccctgtaatataggtc 1421561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 11761078 - 11761116
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  11761078 tttagggttaatggtgctttaccccctgtaatataggtc 11761116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 35434137 - 35434095
Alignment:
Q  177 aaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||| ||||||||||||||| ||||||||||||||||||||    
T  35434137 aaaattaagggttaatggtgctttaccccctgtaatataggtc 35434095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 39846641 - 39846603
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  39846641 tttagggttaatggtgctttaccccctgtaatataggtc 39846603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 48418646 - 48418688
Alignment:
Q  177 aaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  48418646 aaaagttagggttaatggtgctttaccccctgtaatataggtc 48418688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 55090311 - 55090266
Alignment:
Q  174 caaaaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||||    
T  55090311 caaaaaataaagggttaatggtgctttaccccctgtaatataggtc 55090266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 29853686 - 29853650
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  29853686 tagggttaatggtgctttaccccctgtaatataggtc 29853650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 17261024 - 17261059
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  17261024 agggttaatggtgctttaccccctgtaatataggtc 17261059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 33898331 - 33898296
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggt 218  Q
    |||||||||||||||| |||||||||||||||||||    
T  33898331 tagggttaatggtgctttaccccctgtaatataggt 33898296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 35359471 - 35359506
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  35359471 agggttaatggtgctttaccccctgtaatataggtc 35359506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 46994150 - 46994115
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggt 218  Q
    |||||||||||||||| |||||||||||||||||||    
T  46994150 tagggttaatggtgctttaccccctgtaatataggt 46994115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 54012646 - 54012611
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  54012646 agggttaatggtgctttaccccctgtaatataggtc 54012611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 54087796 - 54087753
Alignment:
Q  176 aaaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||    
T  54087796 aaaaaattagggttaatggtgttttaccccctgtaatataggtc 54087753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 3820490 - 3820528
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  3820490 tttagggttaatggtgttttaccccctgtaatataggtc 3820528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 19301171 - 19301213
Alignment:
Q  177 aaaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||| ||||||||||||| | ||||||||||||||||||||    
T  19301171 aaaattaagggttaatggtgttttaccccctgtaatataggtc 19301213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 31341502 - 31341464
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  31341502 tttagggttaatggtgctttacctcctgtaatataggtc 31341464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 33898073 - 33898107
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  33898073 gggttaatggtgctttaccccctgtaatataggtc 33898107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 40066706 - 40066740
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  40066706 gggttaatggtgctttaccccctgtaatataggtc 40066740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 30451591 - 30451554
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  30451591 ttagggttaattgtgctttaccccctgtaatataggtc 30451554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 21549746 - 21549782
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatatagg 217  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  21549746 tttagggttaatggtgctttaccctctgtaatatagg 21549782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 21550040 - 21550004
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||| |||| |||||||||||||||    
T  21550040 tagggttaatggtgctttaccgcctgtaatataggtc 21550004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 23526721 - 23526765
Alignment:
Q  176 aaaaatttagggttaatggtgctgtaccc-cctgtaatataggtc 219  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||    
T  23526721 aaaaatttaaggttaatggtgctttaccctcctgtaatataggtc 23526765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 29941 - 29900
Alignment:
Q  178 aaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  29941 aaatctagggttaatggtgctttaccccctgtaatataggtc 29900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 25562147 - 25562188
Alignment:
Q  178 aaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  25562147 aaattaagggttaatggtgctttaccccctgtaatataggtc 25562188  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 26101661 - 26101702
Alignment:
Q  178 aaatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  26101661 aaattaagggttaatggtgctttaccccctgtaatataggtc 26101702  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 7017069 - 7017104
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  7017069 agggttaatggtgctttaccccctgtaatataggtc 7017104  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 27967461 - 27967500
Alignment:
Q  180 atttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  27967461 attttgggttaatggtgctttaccccctgtaatataggtc 27967500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 7017355 - 7017321
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  7017355 gggttaatggtgctttaccccctgtaatataggtc 7017321  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 7313451 - 7313485
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  7313451 gggttaatggtgctttaccccctgtaatataggtc 7313485  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 31826214 - 31826248
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggt 218  Q
    ||||||||||||||| |||||||||||||||||||    
T  31826214 agggttaatggtgctttaccccctgtaatataggt 31826248  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 33225441 - 33225475
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggt 218  Q
    ||||||||||||||| |||||||||||||||||||    
T  33225441 agggttaatggtgctttaccccctgtaatataggt 33225475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 33352672 - 33352638
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  33352672 gggttaatggtgctttaccccctgtaatataggtc 33352638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 19417947 - 19417980
Alignment:
Q  186 ggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||| ||||||||||||||||||||    
T  19417947 ggttaatggtgctttaccccctgtaatataggtc 19417980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 21604418 - 21604377
Alignment:
Q  179 aatttagggttaatggtgctgta-ccccctgtaatataggtc 219  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  21604418 aatttagggttaatggtgctttacccccctgtaatataggtc 21604377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 24602427 - 24602464
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  24602427 ttagggttaatggtgctttaccccttgtaatataggtc 24602464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 19376253 - 19376213
Alignment:
Q  179 aatttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||| ||||||||||||||| |||||||| |||||||||||    
T  19376253 aattaagggttaatggtgctttaccccctataatataggtc 19376213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 5661937 - 5661900
Alignment:
Q  179 aatttagggttaatggtgctgtaccccctgtaatatag 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5661937 aatttagggttaatggtgctttaccccctgtaatatag 5661900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 2724483 - 2724518
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  2724483 agggttaatggtgctttaccccctgtaatataggtc 2724518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 4633954 - 4633988
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  4633954 gggttaatggtgctttaccccctgtaatataggtc 4633988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 9672897 - 9672931
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  9672897 gggttaatggtgctttaccccctgtaatataggtc 9672931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 10598319 - 10598353
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  10598319 gggttaatggtgctttaccccctgtaatataggtc 10598353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 13012435 - 13012469
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  13012435 gggttaatggtgctttaccccctgtaatataggtc 13012469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 13083845 - 13083879
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  13083845 gggttaatggtgctttaccccctgtaatataggtc 13083879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 28593585 - 28593547
Alignment:
Q  181 tttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||||||| || |||||||||||||||||    
T  28593585 tttagggttaatggtgctttaacccctgtaatataggtc 28593547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 36518916 - 36518882
Alignment:
Q  185 gggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  36518916 gggttaatggtgctttaccccctgtaatataggtc 36518882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 9673196 - 9673152
Alignment:
Q  176 aaaaatttagggttaatggtgctgta-ccccctgtaatataggtc 219  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||    
T  9673196 aaaaatttagggttaatcgtgctttacccccctgtaatataggtc 9673152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 14505 - 14470
Alignment:
Q  184 agggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  14505 agggttaatggtgctttaccccctgtaatataggtc 14470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 149482 - 149519
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  149482 ttagggttaatggtgctttaccccctgaaatataggtc 149519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 53582 - 53545
Alignment:
Q  182 ttagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  53582 ttagggttaacggtgctttaccccctgtaatataggtc 53545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 12396 - 12432
Alignment:
Q  183 tagggttaatggtgctgtaccccctgtaatataggtc 219  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  12396 tagggttaatgatgctttaccccctgtaatataggtc 12432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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