View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_33 (Length: 374)
Name: NF1579_low_33
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 108 - 338
Target Start/End: Complemental strand, 37471532 - 37471303
Alignment:
| Q |
108 |
tgcttataggtttcgtaatgcaaactaattgagtaattttatattcatgacagtaaagccctaatgataaccaagaggagctggtgcgtcccgcagttct |
207 |
Q |
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| T |
37471532 |
tgcttataggtttcgtaatgcaaactaaatgagtaattttatattcatgacagtaaagccctaatgataaccaagaggagctggtgcgtcccgcagttct |
37471433 |
T |
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| Q |
208 |
ttaccgtggaagtggatatcctgcatgaaagaacggaattgtattataaaaacagggaacaccaatgcgaaaccaatggccagcattattatgaaaaaga |
307 |
Q |
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| T |
37471432 |
ttaccgtggaagtggatatcctgcatgaaagaacggaattgtattataaaaacagggaacaccaatgcaaaaccaatggccagcattattatgaaaaaga |
37471333 |
T |
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| Q |
308 |
gagaaaaaatgtacaacatgagataacgaac |
338 |
Q |
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| T |
37471332 |
-aaaaaaaatgtacaacatgagataacgaac |
37471303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 37471648 - 37471561
Alignment:
| Q |
31 |
tacaaagggtatatgtagtataatgccatccaaacgtgtgatcaaagcataagaattctgtataatcaaaatattggtgcttataggt |
118 |
Q |
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| T |
37471648 |
tacaaacggtatatgtagtataatgccatccaaacgtatgatcaaagcataagaattctgtataatcaaaatattggtgcttataggt |
37471561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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