View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_34 (Length: 365)
Name: NF1579_low_34
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 41103039 - 41103391
Alignment:
| Q |
1 |
tcagaatgcagcttctgtttttgacatagtggcagaagggaataataagcaccgagcttccatgttctttccggagctgatggggtttggtcttaaaatt |
100 |
Q |
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| T |
41103039 |
tcagaatgcagcttctgtttttgacacagtggcagaagggaataataagcaccgagcttccatgttcaatccggagctgatggggtttggtcttaaaatt |
41103138 |
T |
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| Q |
101 |
ggattgtgc----aggcttaaattttttcaagaagtggcatttttgtgagacttgtaattcgtagcagtttgcatttcattctttagtcaagtgattgtg |
196 |
Q |
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| T |
41103139 |
ggattgtgcgtgcaggcttaaattttttcaagaagtggcatttttgtgagacttgtaattcgtagcagtttgcatttcattctttagtcaagtgattgtg |
41103238 |
T |
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| Q |
197 |
agcagggagatggttccaatgaagggttattcagtggatatcatggtggcaagtagatttgtggagtctctttctcgtgccaattcacagtaatatgcta |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41103239 |
agcagggagatggttccaatgaagggttattcagtggatatcatggtgacaagtagatttgtggagtctctttctcgtgccaattcacagtaatatgcta |
41103338 |
T |
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| Q |
297 |
gtttggcgtaggcgtgcagatatggatgcaatctagatattttgaggcatctg |
349 |
Q |
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| T |
41103339 |
gtttggcgtaggcgtgcagatatggatgtaatctagatattttgaggcatctg |
41103391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 129 - 345
Target Start/End: Original strand, 41088743 - 41088957
Alignment:
| Q |
129 |
aagtggcatttttgtgagacttgtaattcgtagcagtttgcatttcattctttagtcaagtgattgtgagcagggagatggttccaatgaagggttattc |
228 |
Q |
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| T |
41088743 |
aagtagcattttttagaggcttgcaattcgtagcagtttgtatttcattcttttatcaagtgattgtaagcaggtagatggttccaatgaagtgttattc |
41088842 |
T |
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| Q |
229 |
agtggatatcatggtggcaagtagatttgtggagtctctttctcgtgccaattcacagtaatatgctagtttggcgtaggcgtgcagatatggatgcaat |
328 |
Q |
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|| |||||||||||||| ||| |||||| ||| |||||||||| |||||||||| ||||| ||||||||||||| |||||||||| ||| || || ||| |
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| T |
41088843 |
agaggatatcatggtggtaaggagatttatggggtctctttcttgtgccaattcgcagtattatgctagtttggggtaggcgtgcggatgtg--tgtaat |
41088940 |
T |
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| Q |
329 |
ctagatattttgaggca |
345 |
Q |
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| T |
41088941 |
ctgcatattttgaggca |
41088957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 137 - 300
Target Start/End: Original strand, 1216545 - 1216709
Alignment:
| Q |
137 |
tttttgtgagacttgtaattcgtagcagtttgcatttcattctttagtcaagtgattgtgagcagggagatggttcc-aatgaagggttattcagtggat |
235 |
Q |
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|||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||| |
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| T |
1216545 |
tttttgtgaggattgtaattcgtagcaatttgcatttaattctttactcaagtgattgtgagcagggagaaggttccaaatgaagggttattcaacggat |
1216644 |
T |
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| Q |
236 |
atcatggtggcaagtagatttgtggagtctctttctcgtgccaattcacagtaatatgctagttt |
300 |
Q |
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|| ||||||||||| ||||||||||||||||||||| |||||||||| | ||| || |||||||| |
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| T |
1216645 |
ataatggtggcaaggagatttgtggagtctctttcttgtgccaattctcggtattaagctagttt |
1216709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 41080640 - 41080894
Alignment:
| Q |
1 |
tcagaatgcagcttctgtttttgacatagtggcagaagggaataataagcaccgagcttccatgttctttccggagctgatggggtttggtcttaaaatt |
100 |
Q |
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|||||||||||||||||||||||| ||| ||||||| ||||||| |||||||| | ||||| | || ||| |||| |||| ||||||| | || |
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| T |
41080640 |
tcagaatgcagcttctgtttttgatgcagtagcagaagagaataatgagcaccgatcctccattctgaatctggaactgaaggggaccggtcttagattt |
41080739 |
T |
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| Q |
101 |
ggattgtgcaggcttaaattttttcaagaagtggcatttttgtgagacttgtaattcgtagcagtttgcatttcattctttagtcaagtgattgtgagca |
200 |
Q |
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| ||||| || |||||||||||||||||||| |||||||| |||| |||||||||| ||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
41080740 |
gtattgtacatgcttaaattttttcaagaagcagcatttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcaattgattgtgagca |
41080839 |
T |
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| Q |
201 |
gggagatggttccaatgaagggttattcagtggatatcatggtggcaagtagatttgtggagtctctt |
268 |
Q |
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|||||| |||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
41080840 |
aggagat-------------ggttattcagaggatatcatggtggcaatgagatttgtggagtctctt |
41080894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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