View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_36 (Length: 356)
Name: NF1579_low_36
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 50732539 - 50732204
Alignment:
| Q |
10 |
attatacttacaatcaccaaaacacttgaaaatttcaataactctaaaatctaactcaactagttttacttacnnnnnnn--ccacgtcattgtacataa |
107 |
Q |
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| T |
50732539 |
attatacttacaatcaccaaaacacttgaaaatttcaataactctaaaatctaactcaactagttttacttacaaaaaaaaaccacgtcattgtacataa |
50732440 |
T |
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| Q |
108 |
gctagaaaattataaaacacagtgactctactttaaaaatataataaaatcgcgataaaagataaaccaaaacatgattatgagtaaacagtagttaaac |
207 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50732439 |
gctagaaaattataaaacacagtgactccactttaaaaatataataaaatcgcgataaaagataaaccaaaacatgattatgagtaaacagtagtgaaac |
50732340 |
T |
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| Q |
208 |
tagaattgcatgcatcgctgaataaaacgcacattgatgaaaaacaaaatcatcaataacacagtgaaccgataatgctattgaactgaaacaacgcaca |
307 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50732339 |
tagaattgcatgtatcgctgaataaaacgcacattgatgaaaaacaaaatcatcaataacacagtgaaccgataatgctattgaactgaaacaacgcaca |
50732240 |
T |
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| Q |
308 |
agtaaaacgtgtcgaaattcaaaatcatcatcatct |
343 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
50732239 |
agtaaaacgtgtcgaaattcaaaatcatcatcatct |
50732204 |
T |
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