View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_37 (Length: 339)
Name: NF1579_low_37
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 24112220 - 24112536
Alignment:
| Q |
1 |
agtattagacttttatttactgaaattgaaaatcgtagtaaggttatttaataagttgttaaaacataactaaagttattttaattagtttaatagcaga |
100 |
Q |
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| T |
24112220 |
agtattagacttttatttactgaaattgaaaatcgtagtaaggttatttaacaagttgttaaaacataactaaagttattttaattagtttaatag---a |
24112316 |
T |
|
| Q |
101 |
tacaaatatccatagatgcggataccatcaaatctgcatttatatcaattaaataacaaattgttaaaatatctatttattttacctacaaatatccaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| || |
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| T |
24112317 |
tacaaatatccatagatgcggataccatcaaatctgcatttatatcaattaaataaaaaattgttaaaatatctatttattttacgtgcaaatatcctca |
24112416 |
T |
|
| Q |
201 |
gatgccatctttttaccatccgtaaaactaaccttatatcttcatataacgattaattttatcattgcatcttcttatataatggagatccaaattagat |
300 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24112417 |
gatgccatctttttaccatccctaaaaccaaccttatatcttcatataacgattaattttatcattgcatcttcttatataatggagatccaaattagat |
24112516 |
T |
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| Q |
301 |
tcctccacatcatatgtata |
320 |
Q |
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|||||||||||||||||||| |
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| T |
24112517 |
tcctccacatcatatgtata |
24112536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 13407192 - 13407259
Alignment:
| Q |
117 |
tgcggataccatcaaatctgcatttatatcaattaaataacaaattgttaaaatatctatttatttta |
184 |
Q |
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| T |
13407192 |
tgcggataccatcaaatctatatttatatccattaaataataggtagttaaaatgtctgtttatttta |
13407259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 47304029 - 47304131
Alignment:
| Q |
80 |
tttaattagtttaatagcagatacaaatatccatagatgcggataccatcaaatctgcatttatatcaattaaataacaaattgttaaaatatctattta |
179 |
Q |
| |
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|||| |||||||||||| |||||||||||| | | ||||||| |||||||||||||| | ||| |||||||||| || || |||||||| ||||| |
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| T |
47304029 |
tttagttagtttaatagaagatacaaatatatgtgggtgcggat--catcaaatctgcatctgcatccattaaataacggatagtaaaaatatccattta |
47304126 |
T |
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| Q |
180 |
tttta |
184 |
Q |
| |
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||||| |
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| T |
47304127 |
tttta |
47304131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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