View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_39 (Length: 334)
Name: NF1579_low_39
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 3909748 - 3909456
Alignment:
| Q |
7 |
atgaacaaaattcggttagaggaagtaatgacttttgtgt--catataggttcttcaagagatattaatcattatcacacgatattgaaaactttgcacc |
104 |
Q |
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| T |
3909748 |
atgaacaaaattcgattagaggaagtaatgacttttgtgtgtcatataggttcttcaagagatattaatcactatcacacgatattgaaaacttcgcacc |
3909649 |
T |
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| Q |
105 |
aac------taacnnnnnnn-taatgatattagaagttgagcttaattgtcaatagagatcaatcaaattgataaagaattgattcatatcctaaataaa |
197 |
Q |
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| T |
3909648 |
aacaacatataacaaaaaaaataatgatattagaagttgagtttaattgtcaatagagatcaatcgaattgatgaagaattgattcatatcccaaataaa |
3909549 |
T |
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| Q |
198 |
aaattgattgaattatcgcttcaaactttagtactcattagtaaatcgatgc----atcgtgaatatttcggtcaatattaagttgaaagtat |
286 |
Q |
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| T |
3909548 |
aaattgattgaattatcgctttaaactttagtactcattagtaaatcgatgcataaatcgtgaatatttcggtcaatattaagttgaaagtat |
3909456 |
T |
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