View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1579_low_4 (Length: 662)

Name: NF1579_low_4
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1579_low_4
NF1579_low_4
[»] chr3 (1 HSPs)
chr3 (15-645)||(47271469-47272108)


Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 15 - 645
Target Start/End: Original strand, 47271469 - 47272108
Alignment:
Q  15 caaaggtgacgtgagtgaaggctaagatgaaagatatcgatcgatggcggtttatacaatgcagataaagaatcgaacaacatgtttaagaattaagatc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47271469 caaaggtgacgtgagtgaaggctaagatgaaagatatcgatcgatggcggtttatacaatgcagataaagaatcaaacaacatgtttaagaattaagatc 47271568  T
Q  115 attataaattctgcttttagtaatcttgtggagaaagttttttcttttaaacacaaattcttgcatgaattggtcgtaagcatgttcaacttttgagaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47271569 attataaattctgcttttagtaatcttgtggagaaagttttttcttttaaacacaaattcttgcatgaattggtcgtaagcatgttcaacttttgagaaa 47271668  T
Q  215 gctatgatttgtaattgtcatttagtatgaacatgcacacggatcatcaagatgagaaccgtgtgaatttgtcccaaaaacaagggaatccgtgtctgat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47271669 gctatgatttgtaattgtcatttagtatgaacatgcacacggatcatcaagatgagaaccgtgtgaatttgtcccaaaaacaagggaatccgtgtctgat 47271768  T
Q  315 gttaagagataacatatcaaacgttgtttgttgttctagtattttcagcttgattttcatgtccaagggccagaaccttattta-tacttggagttatta 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47271769 gttaagagataacatatcaaacgttgtttgttgttctagtattttcagcttgattttcatgtccaagggccagaaccttatttattacttggagttatta 47271868  T
Q  414 aaattgattcaagtggtttgatatctcctaatagctatttttcttttatatcatct---agcattaacaatagactacacctaaagaaatgcag-----t 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||     |    
T  47271869 aaattgattcaagtggtttgatatctcctaatagctatttttcttttatatcatctagcagcattaacaatagactacacctaaagaaatgcagttatat 47271968  T
Q  506 tatatgtaatctcttacaccgcttcatatagtgctcaccacattataactaatttccacacaaaaattatactaattaatagtaannnnnnnggcttatg 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||       ||||||||    
T  47271969 tatatgtaatctcttacaccgcttcatatagtgctcaccacattataactaatttccacaaaaacattatactaattaatagtaatttttttggcttatg 47272068  T
Q  606 tactaagtagtaatcacttctagtaaagtattcgattagt 645  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47272069 tactaagtagtaatcacttctagtaaagtattcgattagt 47272108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University