View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_40 (Length: 332)
Name: NF1579_low_40
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_40 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 6912977 - 6913288
Alignment:
| Q |
20 |
ctttagctgcttcaattttaatttttgaaacaagagcatcatattctgaaattgagaggtttgttccatttgatatagcagctttagccatctcatcctg |
119 |
Q |
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| T |
6912977 |
ctttagctgcttcaattttaatttttgaaacaagagcatcatattctgaaattgagaggtttgttccatttgatatagcagctttagccatctcatcctg |
6913076 |
T |
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| Q |
120 |
caactttagtttaagacttttttcctgtagataacatgtacacaacaatatgaaaaccatgtgacagtttggaatagcaccatttcagaaacaaaaaaca |
219 |
Q |
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| T |
6913077 |
caacttttgtttaagacttttttcctgtagataacatgtacacaacaatatgaacaccatgtgacagtttggaatagcaccatttcagaaacaaaaaaca |
6913176 |
T |
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| Q |
220 |
aaccaccttgcatcatcttaccttttccttagcttcagcgaccttagattttgctgctttcatttcttcagccaatattgcattttgatcatcaatataa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6913177 |
aaccaccttgcatcatcttaccttttccttagcttcagcgaccttagattttgctgctttcatttcttcagccaatattgcattttgatcatcaatataa |
6913276 |
T |
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| Q |
320 |
ctcctttgcttc |
331 |
Q |
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|||||| ||||| |
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| T |
6913277 |
ctccttagcttc |
6913288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 156574 - 156260
Alignment:
| Q |
20 |
ctttagctgcttcaattttaatttttgaaacaagagcatcatattctgaaattgagaggtttgttccatttgatatagcagctttagccatctcatcctg |
119 |
Q |
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| T |
156574 |
ctttagttgcttcactttttatctttgcaagaagagcatcatgttctgaaattgagaggctagctccacttgatacaacagcatttgcaatctcatcctg |
156475 |
T |
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| Q |
120 |
caactttagtttaagacttttttcctgtagataacatgtacacaacaatatgaaaaccatgtgacagtttggaatagcaccatttcaga---aacaaaaa |
216 |
Q |
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| T |
156474 |
caacttttgcttaagacttctttcctgtagataacatgtacatcacaatatgaacaccatgtgacagtttgcagttgtacctatacaaaaccaaaaaaaa |
156375 |
T |
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| Q |
217 |
acaaaccaccttgcatcatcttaccttttccttagcttcagcgaccttagattttgctgctttcatttcttcagccaatattgcattttgatcatcaata |
316 |
Q |
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||||| ||||||| ||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||| ||| |||||||||||||||| ||| |
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| T |
156374 |
acaaaacaccttgtgcaatcttaccttttccttagcatcagaaaccttagactttgctgctttcttttcttcagcaaatcttgcattttgatcatctata |
156275 |
T |
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| Q |
317 |
taactcctttgcttc |
331 |
Q |
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| T |
156274 |
aaattccttagcttc |
156260 |
T |
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