View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_41 (Length: 327)
Name: NF1579_low_41
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 1863181 - 1862883
Alignment:
| Q |
18 |
taacccataagtgcaattctctaatccatatatatattctcaacaaccttaataaaacaatactcgttaaggacattcccattattttttataatgaaaa |
117 |
Q |
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| T |
1863181 |
taacccataagtgcaattctctaatccatatatatattctcaacaaccttaataaaacaatactcgttaaggacattcccattattttttataatgaaaa |
1863082 |
T |
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| Q |
118 |
taaatataagaagagcacgtgaaataaagaaggcaaagataaaaataatgactatatttacttacacactaatcaaaacattgttttttagagaaacagt |
217 |
Q |
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| T |
1863081 |
taaatataagaagagcacgtgaaataaagaaggcaaagataaaaataatgactatatttacttacacactaatcaaaacattgttttttagagaaacaat |
1862982 |
T |
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| Q |
218 |
ggaaaaagatgaagaattcttcacatattcaaatcactaaagagtgataaaatcattaattaccatatcaacatctcgatcagtaataacacgcttcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1862981 |
ggaaaaagatgaagaattcttcacatattcaaatcactaaagagagataaaatcattaattaccatatcaacatctcgatcagtaataacacgcttcat |
1862883 |
T |
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