View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_42 (Length: 300)
Name: NF1579_low_42
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 38582007 - 38582275
Alignment:
| Q |
18 |
aatgtctaatgtccttatttatttctcttaattaatctgtattagtcctataggaatttctacttgcttttcgtatacaacattgtggtaataattaatg |
117 |
Q |
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| T |
38582007 |
aatgtctaatgtccttatttatttctcttaattaatctgtattagtcctataggaatttctacttgcttttcgtatacaacattgtggtaataattaatg |
38582106 |
T |
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| Q |
118 |
aaatttaatttcaacctttagtgaatccaagatcaaagggtataccagtggcaggcaaccatacaccaccttcaatccattgagcagcagtatatttagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582107 |
aaatttaatttcaacctttagtgaatccaagatcaaagggtataccagtggcaggcaaccatacaccaccttcaatccattgagcagcagtatatttagt |
38582206 |
T |
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| Q |
218 |
tgcatcagctttgctaagaacaccctttccccacttaactcttgcttgaacatttgaacctggtccagt |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582207 |
tgcatcagctttgctaagaacaccctttccccacttaactcttgcttgaacatttgaacctggtccagt |
38582275 |
T |
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