View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_43 (Length: 298)
Name: NF1579_low_43
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 167 - 296
Target Start/End: Complemental strand, 14539228 - 14539100
Alignment:
| Q |
167 |
tataagaaaagagcctattacataatataatatgtgataattttttcttcttctgataaaagatgaatgacgcatacattacttatgacggttgtcaagg |
266 |
Q |
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| T |
14539228 |
tataagaaaagagc-tattacataatataatatgtgataattttttcttcttctgataaaagatgaatgacacatacattagttatgacggttgtcaagg |
14539130 |
T |
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| Q |
267 |
taatagccattttcaatcattaatctcatc |
296 |
Q |
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| T |
14539129 |
taatacccattttcaatcattaatctcatc |
14539100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 14539321 - 14539226
Alignment:
| Q |
9 |
accaccaccaccaacaattcagattatttcgtatttgatttgatgttatggtgcgctaacagaataaattcaacaatttattataaaagatattat |
104 |
Q |
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| T |
14539321 |
accaccaccaccaacaattcagattattttgtatttgatttgatgttatggtgccctaacagaataaattcaacaatttattataaaagatgttat |
14539226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 297
Target Start/End: Original strand, 7136986 - 7137075
Alignment:
| Q |
208 |
tttttcttcttctgataaaagatgaatgacgcatacattacttatgacggttgtcaaggtaatagccattttcaatcattaatctcatca |
297 |
Q |
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| T |
7136986 |
tttttcttcttttgataattgatgaatgacacatgcattttttgtgacggttgacaagatattagccattttcgatcactaatatcatca |
7137075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 4459141 - 4459070
Alignment:
| Q |
208 |
tttttcttcttctgataaaagatgaatgacgcatacattacttatgacggttgtcaaggtaatagccatttt |
279 |
Q |
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| T |
4459141 |
tttttcttcttctgataaacgatgaatgacacatgcattagttatgacggttgacaagatattaaccatttt |
4459070 |
T |
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