View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_44 (Length: 289)
Name: NF1579_low_44
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 34546402 - 34546137
Alignment:
| Q |
8 |
tgaaatgaaatatttttcggattctccttcacattttctattaccttttgagacatctctttagcttctttaaactgactaaacatggttttttacagga |
107 |
Q |
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| T |
34546402 |
tgaaatgaaatttttttcggattctccttcacattttctattaccttttgagacctctctttagcttctttaaaccgactaaacatggttttttacagga |
34546303 |
T |
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| Q |
108 |
atgactcatgtgaaatgtcataagaagttcaagaaatgccttattaggtcacaaaaagccgggaaagttggcttttcaaaagagtgtccagtcagtacca |
207 |
Q |
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| T |
34546302 |
atgactcatgtgaaatgtcataagaagttcaagaaatgccttattagggcacaaaaagccgggaaagttggcttttctaaggagtgtccagtcagtacca |
34546203 |
T |
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| Q |
208 |
ctgtgcctaccatgataagaggcatggacttagctatcatgttgagcgatttgggtgacaactttc |
273 |
Q |
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| T |
34546202 |
ctgtgcctaccatgataagaggcatggacttagctatcatgttgagcgatttgggtgacaactttc |
34546137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 267
Target Start/End: Complemental strand, 34549274 - 34549049
Alignment:
| Q |
38 |
acattttctattaccttttgagacatctctttagcttctttaaactgactaaacatggttttttacaggaatgactcatgtgaaatgtcataagaagttc |
137 |
Q |
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| T |
34549274 |
acattttctattaccttttgagacctatcttgtgctgctttaaacagactaaacatggtttt--acaggaatgactaatgtgaaatgtcataagaagttc |
34549177 |
T |
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| Q |
138 |
aagaaatgccttattaggtcacaaaaagccgggaaagttggcttttcaaaagagtgtccagtcagtaccactgtgcctaccatgataagaggcatggact |
237 |
Q |
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| T |
34549176 |
aagaactgcctagttaaaaaacggaaagccgggaagtttggattttc--aagagtgtcctgttagtaccactgtgcctaccatgataagaggcatggact |
34549079 |
T |
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| Q |
238 |
tagctatcatgttgagcgatttgggtgaca |
267 |
Q |
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| T |
34549078 |
tggccatcttgttgcacgaattgggtgaca |
34549049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 34541226 - 34541073
Alignment:
| Q |
97 |
tttttacaggaatgactcatgtgaaatgtcataagaagttcaagaaatgccttattaggtcacaaaaagccgggaaagttggcttttcaaaagagtgtcc |
196 |
Q |
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| T |
34541226 |
tttttacaggagtgactcatgtgaaatgtcataaaaggttaaagaactgtttaattagggtacaaagagccgggaaggttggattttcaaaagagtgtcc |
34541127 |
T |
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| Q |
197 |
agtcagtaccactgtgcctaccatgataagaggcatggacttagctatcatgtt |
250 |
Q |
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| T |
34541126 |
ggtcagtatcgcagcgcctaccatgatacgtggcatggacttggccatcatgtt |
34541073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 269
Target Start/End: Complemental strand, 34553912 - 34553689
Alignment:
| Q |
55 |
ttgagacatctctttagcttctttaaactgactaaacatggtttttta---------caggaatgactcatgtgaaatgtcataagaagttcaagaaatg |
145 |
Q |
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| T |
34553912 |
ttgagacctctctttaacttctttgaactgactaaacatgttttttttttctttcttcaggaatgactcatgtgaaatgccataagagattgaagaactg |
34553813 |
T |
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| Q |
146 |
ccttattaggtcacaaaaagccgggaaagttggcttttcaaaagagtgtccagtcagtaccactgtgcctaccatgataagaggcatggacttagctatc |
245 |
Q |
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| T |
34553812 |
cctaataagggaacaaaaagccaacaaggttggattttcgaaagagtgtccggccaatgtcgccgtgcctaccatgataaaaggcatggacttggccatc |
34553713 |
T |
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| Q |
246 |
atgttgagcgatttgggtgacaac |
269 |
Q |
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| T |
34553712 |
ttgttgagcgaattgggtggcaac |
34553689 |
T |
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