View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_47 (Length: 282)
Name: NF1579_low_47
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 36 - 266
Target Start/End: Complemental strand, 7181972 - 7181742
Alignment:
| Q |
36 |
tcacggagtcaccataatttcagcaaaaccatcgcaataccaaacatgcactaagtgtaattgcatgtcaatgaacaatcaatcgcttagaattataata |
135 |
Q |
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| T |
7181972 |
tcacagagtcaccataatttcagcaaaaccatcgcaataccaaacatgcactaagtgtgattgcatgtcaatgaacaatcaatcgcttagaattataata |
7181873 |
T |
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| Q |
136 |
attaaattttaaagtttttctttataaaaacataatacacttagttgttaaaggttataatatatgtagtcatcaaatataaatttagtatattcttgtc |
235 |
Q |
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| T |
7181872 |
attaaattttaaagtttttctttataaaaacataatacacttagttgttaaagggtataatatatgtagtcatcaaatataaatttagtatattcttgtc |
7181773 |
T |
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| Q |
236 |
catgcaagaaaattcaggtatgagaagatga |
266 |
Q |
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| T |
7181772 |
catgcaagaaaattcaggtatgagaagatga |
7181742 |
T |
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