View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1579_low_48 (Length: 280)
Name: NF1579_low_48
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_48 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 7737381 - 7737139
Alignment:
| Q |
13 |
aatatagtttgtgtctagaaattaatgacaaacaagcacacaaaaacaaagaaatgaaggtgtgtttcagttaatcgttgtaggacacacattttcttag |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7737381 |
aatatagtttgtgtctataaattaatgacaaacaagcacacagaaacaaagaaatgaaggtgtgtttcagttaatcgttgtaggacacacattttcttag |
7737282 |
T |
|
| Q |
113 |
gcaggaatggttggggaacaaggttgaattatgcattaattaataactcaagttccttgaacctttttcaatttttgttgtaatttttaagcaaggaata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7737281 |
gcaggaatggttggggaacaaggttgaattatgcattaattaataactcaagttccttgaacc-ttttcaatttttgttgtaattattaagcaaggaata |
7737183 |
T |
|
| Q |
213 |
ttgtacgaacaagttaccacttgaataatggttatattttacta |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7737182 |
ttgtacgaacaagttaccacttgaataatggttatattttacta |
7737139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University