View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_52 (Length: 269)
Name: NF1579_low_52
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 37472228 - 37472449
Alignment:
| Q |
29 |
aaatgagtatatagcctacaacttccaactttcaaataatgttttgtcgtgtggatgttgtaaaggttattttaagtggaaatcttctgacgctttaacc |
128 |
Q |
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| T |
37472228 |
aaatgagtatatagcctacaacttccaactttcaaataatgttttgtcgtgtggatgttgtgaaggttattttaagtggaaatcttctgacgctttaacc |
37472327 |
T |
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| Q |
129 |
tatgatgaatgaatctgggtttcttagtatgctgaattaacaaccttcaacagagttgttcttatacggatacaagctaactatgttttcattcttttac |
228 |
Q |
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| T |
37472328 |
tctgatgaatgaatctgggtttcttagtatgctgaattaacaaccttcaacagggttgttcttatacggatacaagctaactatgttttcattcttttac |
37472427 |
T |
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| Q |
229 |
aagggcgtcacgtaagctctta |
250 |
Q |
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| T |
37472428 |
aagggcgtcacgtaagctctta |
37472449 |
T |
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