View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1579_low_53 (Length: 262)

Name: NF1579_low_53
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1579_low_53
NF1579_low_53
[»] chr6 (11 HSPs)
chr6 (141-214)||(6395366-6395442)
chr6 (1-245)||(6426985-6427223)
chr6 (1-40)||(6423908-6423947)
chr6 (1-40)||(6596249-6596288)
chr6 (1-40)||(14809702-14809741)
chr6 (140-246)||(14821181-14821290)
chr6 (1-39)||(6410699-6410737)
chr6 (54-215)||(6399759-6399927)
chr6 (1-40)||(6417095-6417134)
chr6 (1-39)||(19633104-19633142)
chr6 (3-40)||(6395540-6395577)
[»] chr8 (2 HSPs)
chr8 (1-40)||(32151971-32152010)
chr8 (1-40)||(17642949-17642988)
[»] chr7 (1 HSPs)
chr7 (1-40)||(10615716-10615755)
[»] chr4 (4 HSPs)
chr4 (1-36)||(553766-553801)
chr4 (1-40)||(3437634-3437673)
chr4 (2-36)||(1547718-1547752)
chr4 (8-40)||(21833298-21833330)
[»] chr5 (1 HSPs)
chr5 (8-40)||(28532816-28532848)
[»] chr1 (1 HSPs)
chr1 (8-40)||(19467452-19467484)


Alignment Details
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 6395442 - 6395366
Alignment:
Q  141 acaatcagactaacttcgttaatacaattcaccgtctgttatccatgtctc---gtatacaacatttgaatctttgt 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||   |||||||||||||| | ||||||    
T  6395442 acaatcagactaacttcgttaatacaattcaccgtctgctatccaagtctccatgtatacaacatttggaactttgt 6395366  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 6427223 - 6426985
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcacttgtcatggtacttatattttttgtgggaaggatctgtcaaccattgttacttgtttccctttg 100  Q
    |||||||||||| |||||||||||||||| |||||||||| | |||||||   |||| |||   || ||||||||| ||||||||  |||||||||||||    
T  6427223 tttctcccaaaatattacaactttgacctttctcacttgttacggtactt---ttttctgtaacaacgatctgtcacccattgttgattgtttccctttg 6427127  T
Q  101 ctacaagaactcaacctctccgaccctcatgtcttcaataacaatcagactaacttcgttaatacaattcaccgtctgttatccatgtctc---gtatac 197  Q
    ||  || |||||||||||    |||||   ||| ||||||      || |||||||| ||||| |||||||| || ||||||||| || ||   ||||||    
T  6427126 ctcaaacaactcaacctccatcaccctttggtcatcaata------agcctaacttcattaattcaattcactgtatgttatccaagtgtccatgtatac 6427033  T
Q  198 aacatttgaatctttgtagaacttcctttctaaaggatcaacatgttg 245  Q
    |||||||| | ||| |||| ||||| |||||||  ||||||| |||||    
T  6427032 aacatttggaacttcgtagtacttcttttctaaccgatcaacttgttg 6426985  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6423947 - 6423908
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcacttgt 40  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  6423947 tttctcccaaaacataacaactttgacctctctcacttgt 6423908  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6596249 - 6596288
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcacttgt 40  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  6596249 tttctcccaaaacataacaactttgacctctctcacttgt 6596288  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 14809741 - 14809702
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcacttgt 40  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  14809741 tttctcccaaaacattacaactttggcctctctcacttgt 14809702  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 14821290 - 14821181
Alignment:
Q  140 aacaatcagactaacttcgttaatacaattcaccgtctgttatccatgtctc---gtatacaacatttgaatctttgtagaacttcctttctaaaggatc 236  Q
    |||||| |||||||||| |||| ||||||||| ||||||||||||| |||||   |||||||||||||| | |||   || ||||  ||||||||  |||    
T  14821290 aacaatgagactaactttgttagtacaattcaacgtctgttatccaagtctccatgtatacaacatttggaacttcaaagcacttattttctaaataatc 14821191  T
Q  237 aacatgttgt 246  Q
    ||||||||||    
T  14821190 aacatgttgt 14821181  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6410737 - 6410699
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcacttg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  6410737 tttctcccaaaacattacaactttgacctctttcacttg 6410699  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 215
Target Start/End: Complemental strand, 6399927 - 6399759
Alignment:
Q  54 ttttttgtgggaaggatctgtcaaccattgttacttgtttccctttgctacaagaactcaacctctccgaccctc----atgtcttcaataacaatcaga 149  Q
    |||||||||  | |||| ||||| ||||||||  |||||||||||| ||| ||||| ||||| ||||  || |||    |||||| | ||||||||  ||    
T  6399927 ttttttgtgacatggatatgtcacccattgttgattgtttcccttttctagaagaattcaacatctctcactctctctgatgtctcccataacaatagga 6399828  T
Q  150 ctaacttcgttaatacaattcaccgtctgttatccatgtctc---gtatacaacatttgaatctttgta 215  Q
      |||||  ||||||||||||||||||||||||||| |||||   |||||||| ||||| | |||||||    
T  6399827 tcaacttttttaatacaattcaccgtctgttatccaagtctccatgtatacaatatttggaactttgta 6399759  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6417134 - 6417095
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcacttgt 40  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  6417134 tttctcccaaaagaatacaactttgacctctctcacttgt 6417095  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19633142 - 19633104
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcacttg 39  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  19633142 tttctccgaaagcattacaactttgacctctctcacttg 19633104  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 6395577 - 6395540
Alignment:
Q  3 tctcccaaaacattacaactttgacctctctcacttgt 40  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  6395577 tctcccaaaatattacaactttgacctctctcagttgt 6395540  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32152010 - 32151971
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcacttgt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32152010 tttctcccaaaacattacaactttgacctctctcacttgt 32151971  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 17642949 - 17642988
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcacttgt 40  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  17642949 tttctcccagaatattacaactttgacctctctcacttgt 17642988  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10615755 - 10615716
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcacttgt 40  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  10615755 tttctcccaaaagattacaactttgacctctctcacttgt 10615716  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 553801 - 553766
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcac 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  553801 tttctcccaaaacattacaactttgacctctctcac 553766  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3437634 - 3437673
Alignment:
Q  1 tttctcccaaaacattacaactttgacctctctcacttgt 40  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  3437634 tttctcccaaaagattacaactttgacctctctcagttgt 3437673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 1547718 - 1547752
Alignment:
Q  2 ttctcccaaaacattacaactttgacctctctcac 36  Q
    |||||||||||||||||||||||||| ||||||||    
T  1547718 ttctcccaaaacattacaactttgacatctctcac 1547752  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 21833298 - 21833330
Alignment:
Q  8 caaaacattacaactttgacctctctcacttgt 40  Q
    ||||||||||| |||||||||||||||||||||    
T  21833298 caaaacattactactttgacctctctcacttgt 21833330  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 28532848 - 28532816
Alignment:
Q  8 caaaacattacaactttgacctctctcacttgt 40  Q
    |||||||||||||||||||||||| ||||||||    
T  28532848 caaaacattacaactttgacctctttcacttgt 28532816  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 19467452 - 19467484
Alignment:
Q  8 caaaacattacaactttgacctctctcacttgt 40  Q
    ||||| |||||||||||||||||||||||||||    
T  19467452 caaaatattacaactttgacctctctcacttgt 19467484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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