View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_55 (Length: 253)
Name: NF1579_low_55
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_55 |
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| [»] chr2 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 10943094 - 10943329
Alignment:
| Q |
16 |
aaaggaaatacaaacacaacacggcaagcatttgtaagttgtaaagaggagggaatggaaaaggccggcagctagcaggtataaatgtaacattggcatc |
115 |
Q |
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| T |
10943094 |
aaaggaaatacaaacccaacacgacaagcatctgtaagttataaagaggag--aatggaaaaggccggcagctagcgggtgtaaatgtaacattggcatc |
10943191 |
T |
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| Q |
116 |
cttctctatgttgattgacagggtaggctttggaatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgt |
215 |
Q |
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| T |
10943192 |
cttctctatgtcgcttaacaaggtaggctttggaatgtgtattaggtatgatgttggtgaatttgtgttggccaaaacggattagtttgctcccctgtgt |
10943291 |
T |
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| Q |
216 |
gatgttgatgtggcggaggtcgtagctttacacacagc |
253 |
Q |
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| T |
10943292 |
gatgttgatgtggtggaggtcgtagctttacacacagc |
10943329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 10948963 - 10949198
Alignment:
| Q |
16 |
aaaggaaatacaaacacaacacggcaagcatttgtaagttgtaaagaggagggaatggaaaaggccggcagctagcaggtataaatgtaacattggcatc |
115 |
Q |
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| T |
10948963 |
aaaggaaatacaaacccaacacgacaagcatctgtaagttataaagaggag--aatggaaaaggccggcagctagcgggtgtaaatgtaacattggcatc |
10949060 |
T |
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| Q |
116 |
cttctctatgttgattgacagggtaggctttggaatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgt |
215 |
Q |
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| T |
10949061 |
cttctctatgtcgcttaacaaggtaggctttggaatgtgtattaggtatgatgttggtgaatttgtgttggccaaaacggattagtttgctcccctgtgt |
10949160 |
T |
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| Q |
216 |
gatgttgatgtggcggaggtcgtagctttacacacagc |
253 |
Q |
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| T |
10949161 |
gatgttgatgtggtggaggtcgtagctttacacacagc |
10949198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 12555734 - 12555636
Alignment:
| Q |
137 |
ggtaggctttggaatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggt |
235 |
Q |
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| T |
12555734 |
ggtaggcttggggatgtgtattagaaatgatgttggtgagttcgttcttgctaaaacggcttggtttgctcctctttgtgatgtcgatgtggaggaggt |
12555636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 253
Target Start/End: Original strand, 6860201 - 6860306
Alignment:
| Q |
148 |
gaatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggtcgtagctttaca |
247 |
Q |
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||||||| ||||| |||||| ||||||| || || ||||||||| |||| |||||||||||| |||||||||||||| | ||| | ||| | |||||| |
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| T |
6860201 |
gaatgtgcattagtaatgatgctggtgaatttaggcgggccaaaacagattagtttgctcccctatgtgatgttgatgtaggggaagccgttggtttaca |
6860300 |
T |
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| Q |
248 |
cacagc |
253 |
Q |
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|||||| |
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| T |
6860301 |
cacagc |
6860306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 31957367 - 31957248
Alignment:
| Q |
137 |
ggtaggctttggaatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgat--gttgatgt-ggcggag |
233 |
Q |
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||||||||| ||||||||||||||| |||||| ||||||| || || |||||||||| |||||||||||||||||||||||| |||||||| || |||| |
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| T |
31957367 |
ggtaggcttgggaatgtgtattaggaatgatgctggtgaatttatgttggccaaaacagattggtttgctcccctgtgtgatgcgttgatgtggggggag |
31957268 |
T |
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| Q |
234 |
gtcgtagctttacacacagc |
253 |
Q |
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||| ||| |||| ||||||| |
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| T |
31957267 |
gtcataggtttatacacagc |
31957248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 253
Target Start/End: Complemental strand, 24329678 - 24329492
Alignment:
| Q |
69 |
aatggaaaaggccggcagctagcaggtataaatgtaacattg--gcatccttctctatgttgattgacagggtaggctttggaatgtgtattaggtatga |
166 |
Q |
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|||| |||| |||||||||| ||||||||||||||||||||| || || || ||| || | | ||| || |||| |||||||| |||||| |||| |
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| T |
24329678 |
aatgaaaaaagccggcagctggcaggtataaatgtaacattgatgcgtctttttcttcgtcgctaaacatggattgcttgggaatgtgcattaggaatga |
24329579 |
T |
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| Q |
167 |
tgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggtcgtagctttacacacagc |
253 |
Q |
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| T |
24329578 |
tgtcagggaatttgtgctggccaaaacggattggtttgctccactgtgtgatgttgatctgggggaagccgttggtctacacacagc |
24329492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 249
Target Start/End: Original strand, 33314842 - 33315023
Alignment:
| Q |
70 |
atggaaaaggccggcagctagcaggtataaatgtaacattg--gcatccttctctatgttgattgacagggtaggctttggaatgtgtattaggtatgat |
167 |
Q |
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|||||||| ||||||| | ||||||||||||||||||||| | ||| || ||| || | || ||||||||| || |||||||| |||||| ||||| |
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| T |
33314842 |
atggaaaaagccggcaacgggcaggtataaatgtaacattgatggatcattttcttcgtcgtttatcagggtaggattgggaatgtggattaggaatgat |
33314941 |
T |
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| Q |
168 |
gttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggtcgtagctttacaca |
249 |
Q |
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| T |
33314942 |
gctggtgaatttgtgcgggccaaaatagattggtttgctcccttctgtaatgttgatgtcggggaagtcgttggtttacaca |
33315023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 39839859 - 39839908
Alignment:
| Q |
189 |
aaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggtcgt |
238 |
Q |
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| T |
39839859 |
aaaacggatttgtttgctcctctgtgtgatgttgatgtgggggaggtcgt |
39839908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 6969361 - 6969438
Alignment:
| Q |
149 |
aatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgatgt |
226 |
Q |
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| T |
6969361 |
aatgtgcatcaggaatgatgctagtgaatttgtgcgggctaaaacggattggtttgctcccctgtgtgatgttgatgt |
6969438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 49407435 - 49407345
Alignment:
| Q |
133 |
acagggtaggctttggaatgtgtattaggtatgatgttggtgaactt-gtgctggccaaaacggattggtttgctcccctgtgtgatgttg |
222 |
Q |
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| T |
49407435 |
acagggtaggcttgggaatgtgcattataaatgatgctggtgaaattcgtgttggccaaaacggattggcttgctcccatgtgtgatgttg |
49407345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 1479671 - 1479515
Alignment:
| Q |
70 |
atggaaaaggccggcagctagcaggtataaatgtaacattg--gcatccttctctatgttgattgacagggtaggctttggaatgtgtattaggtatgat |
167 |
Q |
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|||||||| |||||||| |||||||||||||||| |||| ||||| || ||| ||| || ||| ||||| || ||||| || |||||| ||||| |
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| T |
1479671 |
atggaaaaaaccggcagcgggcaggtataaatgtaatattgctgcatcattttcttcattgcttaacattgtaggattgggaatatgcattaggaatgat |
1479572 |
T |
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| Q |
168 |
gttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgat |
224 |
Q |
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| T |
1479571 |
gctggtgaatttgtgcggtccaaaacggattggtttgctcccttatgcgatgttgat |
1479515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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