View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_57 (Length: 251)
Name: NF1579_low_57
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4180551 - 4180306
Alignment:
| Q |
1 |
tatctgtgactgcactgcatgcatttgattttaa----------cagttcagggcttatggtttatattgattgattacattctaacgtggggaagctac |
90 |
Q |
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| T |
4180551 |
tatctgtgactgcactgcatgcatttgattttaattttttataacagttcagggtttatggtttatattgattgattacattctaacgtggggaagctac |
4180452 |
T |
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| Q |
91 |
ggtcacaaaacaagcattctcctcctctaggcatggaactatcataacacgtgcatcagcaaccgatccgatccaacaagaaacatgaacaggcttattt |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
4180451 |
ggtcacaaaacaagcattctcctcctctaggcatggaactatcataacacgtgcatcagcaaccgacccaatccaacaagaaacatgaacaggcttattt |
4180352 |
T |
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| Q |
191 |
tcttcatgaaaaacaacctcatacactccaaaatcattccatgatg |
236 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4180351 |
tcttcatgaaaaactacctcatacactccaaaatcattccatgatg |
4180306 |
T |
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