View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_58 (Length: 249)
Name: NF1579_low_58
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_58 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 45550535 - 45550287
Alignment:
| Q |
1 |
tagaaacttaggtatgattagttaagttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttacattgagattca |
100 |
Q |
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| T |
45550535 |
tagaaacttaggtatgatcggttaagttttgttaaaaatagattcaatgaaaacaatacaagacaatagagacgttcatttttatttacattgagattca |
45550436 |
T |
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| Q |
101 |
ataaatttcttggattaggataaaatgtgaattttactctttctccagtgaccctaacaatttgttttccattgagttaatactttcatgtgtgttggct |
200 |
Q |
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| T |
45550435 |
ataaatttcttggattaggataaaatgtgaattttactctttctccagtgacactaacaatttgttttccattgagttaatactttcatgtgtgttggct |
45550336 |
T |
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| Q |
201 |
tccagaaagtgatgaaataaaagacattacaccactcgaggaatctctc |
249 |
Q |
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| T |
45550335 |
tccagaaagtgatgaaataaaagacattacaccactcgaggaatctctc |
45550287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 45545188 - 45545117
Alignment:
| Q |
177 |
ttaatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctct |
248 |
Q |
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| T |
45545188 |
ttaatactttcatttgcgttggcttacaggaagtgatgaaataaaagacataacaccactcgaggaatctct |
45545117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 45544281 - 45544217
Alignment:
| Q |
184 |
tttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctct |
248 |
Q |
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| T |
45544281 |
tttcatgtgtgttggcttacagaaagtaatgaaacaaaagacattacaccgcttgaggaatctct |
45544217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 45544410 - 45544343
Alignment:
| Q |
41 |
gattcaatgaaaataatacaagacaatagagacgttcatttttatttacattgagattcaataaattt |
108 |
Q |
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| T |
45544410 |
gattcaatgaaaataatataagtcaatagactcattcttttttatttacattgatattcaatcaattt |
45544343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 19670886 - 19670993
Alignment:
| Q |
25 |
agttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttacattgagattcaataaatttcttgga-ttaggataa |
123 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||||| ||||| |||||||| ||||| ||||| || ||||| |
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| T |
19670886 |
agttttgttaaaaatatattcaatgaaaataatacaagacaatatattcattcatttttatttgcattgtgattcaatcaattttttggagataagataa |
19670985 |
T |
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| Q |
124 |
aatgtgaa |
131 |
Q |
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| T |
19670986 |
aatgtgaa |
19670993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 19691998 - 19692064
Alignment:
| Q |
167 |
ttccattgag-ttaatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacac |
232 |
Q |
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| T |
19691998 |
ttccattgagattaatactttcatatgtgttggctcatagaaagtgattaaataaaatacattacac |
19692064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 36615909 - 36615992
Alignment:
| Q |
25 |
agttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttacattgagattcaataaattt |
108 |
Q |
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| T |
36615909 |
agttttgttaaaaataaattcagtgaaaataatacaagacaatagactcattcatttttatttgcattgacattcaatcaattt |
36615992 |
T |
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