View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1579_low_60 (Length: 249)

Name: NF1579_low_60
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1579_low_60
NF1579_low_60
[»] chr5 (9 HSPs)
chr5 (60-249)||(29999611-29999800)
chr5 (84-249)||(29990907-29991072)
chr5 (84-249)||(29963302-29963467)
chr5 (84-249)||(30011331-30011496)
chr5 (83-247)||(30006051-30006215)
chr5 (84-247)||(30044940-30045103)
chr5 (84-247)||(29952199-29952362)
chr5 (105-245)||(30070791-30070931)
chr5 (84-246)||(29944079-29944241)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 60 - 249
Target Start/End: Complemental strand, 29999800 - 29999611
Alignment:
Q  60 tagtagtaataaagagtacaaatgtacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatct 159  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29999800 tagtagtaataaatagtacaaatgtacctgaaggtcaaaaatgcctagccaaggaacataatcagccagattaaaagctcccatcaaagttaatccatct 29999701  T
Q  160 ttaatcatcttcttcaagtcaaattgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatc 249  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||    
T  29999700 ttaatcatcttcttcaagtcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctcgacaatc 29999611  T

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Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 29991072 - 29990907
Alignment:
Q  84 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 183  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||  ||||| |||| || || ||||||||| ||||||    
T  29991072 tacctgaaggtcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatccttcttgaaccaacttcttcaaatcaaat 29990973  T
Q  184 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatc 249  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  29990972 tgctcatacttacctctacccaatatcatcttatacacaatatcttcaataacattctctacaatc 29990907  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 29963467 - 29963302
Alignment:
Q  84 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 183  Q
    ||||||||| ||||||   |||| ||||| ||||||||| ||||||||||||||||| | || ||  | ||| |||| || || |||||| || ||||||    
T  29963467 tacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaat 29963368  T
Q  184 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatc 249  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  29963367 tgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctacaatc 29963302  T

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Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 84 - 249
Target Start/End: Original strand, 30011331 - 30011496
Alignment:
Q  84 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 183  Q
    ||||||||| ||||||   |||| ||||| ||||||||| ||||||||||||||||| | || ||  | ||| |||| || || |||||| || ||||||    
T  30011331 tacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaat 30011430  T
Q  184 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatc 249  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  30011431 tgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctacaatc 30011496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 83 - 247
Target Start/End: Complemental strand, 30006215 - 30006051
Alignment:
Q  83 gtacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaa 182  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  | | | |||  ||  | ||| |||| ||||||    
T  30006215 gtacctgaaggtcaaaaacgcctagccaaggtacataatcagccagattaaaagctcccatcaaagccattgcttctagaactaacttattcatgtcaaa 30006116  T
Q  183 ttgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaa 247  Q
    |||||||||||||| || ||| || |||||||||| ||||||||| |||||||||||||||||||    
T  30006115 ttgctcatacttactccgaccaaacatcatcttatacacaatatcctcaataagattctctacaa 30006051  T

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Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 247
Target Start/End: Original strand, 30044940 - 30045103
Alignment:
Q  84 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 183  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||  ||||| |||| || ||   ||||||||||||||    
T  30044940 tacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatccttcttgaaccaaactcttcaagtcaaat 30045039  T
Q  184 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaa 247  Q
    ||||||||||||| || ||| || |||| ||||| ||||||||| || || |||||||||||||    
T  30045040 tgctcatacttactccgaccaaacatcaacttatacacaatatcttctattagattctctacaa 30045103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 84 - 247
Target Start/End: Complemental strand, 29952362 - 29952199
Alignment:
Q  84 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 183  Q
    ||||||||| ||||| |  |||||||||||||||||||| ||||||||||||||||| | |||||  ||| | |||| || || | |||| |||||||||    
T  29952362 tacctgaagatcaaatacacctagccaaggaacataatcagccagattaaaagctccaaccaaagccaatacgtcttgaaccaccctctttaagtcaaat 29952263  T
Q  184 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaa 247  Q
    || |||||||| | || ||||||||||||||||| ||||||||| |||||||||||||||||||    
T  29952262 tgatcatacttgctccgacccaatatcatcttatacacaatatcctcaataagattctctacaa 29952199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 245
Target Start/End: Original strand, 30070791 - 30070931
Alignment:
Q  105 tagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaattgctcatacttacccctaccc 204  Q
    |||||||||||||||||| ||||||||||||||||| ||||||   ||| | | || || ||  || ||||||||||||||||||||||||| ||  ||     
T  30070791 tagccaaggaacataatcagccagattaaaagctccaatcaaaaccaattcttgttgaaccaaatttttcaagtcaaattgctcatacttactccgtcca 30070890  T
Q  205 aatatcatcttatgcacaatatcatcaataagattctctac 245  Q
    || |||| ||||| ||||||||| || || |||||||||||    
T  30070891 aacatcaacttatacacaatatcttctattagattctctac 30070931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 29944241 - 29944079
Alignment:
Q  84 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 183  Q
    ||||||||| |||||  |||||| ||||||||||||||| |||| |||||||||||| |||||||  | | | |||| || || | |||| | |||||      
T  29944241 tacctgaagatcaaatgtgcctaaccaaggaacataatcagccatattaaaagctccaatcaaagccattacgtcttgaaccaacctctttaggtcaata 29944142  T
Q  184 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctaca 246  Q
    || |||||||||| || |||||| | |||||||| ||||||||| || |||| ||||||||||    
T  29944141 tgatcatacttactccgacccaacaccatcttatacacaatatcctctataacattctctaca 29944079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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