View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_62 (Length: 247)
Name: NF1579_low_62
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_62 |
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| [»] scaffold0224 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 17945 - 17699
Alignment:
| Q |
1 |
gcagttttttacaagccatcactggaaaattgaaagtaaaatctttttaaggatgtgaaataaagtagtactcactccatcatgatatgcactcaataat |
100 |
Q |
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| T |
17945 |
gcagttttttacaagccatcactggaaaattgaaagtaaaatctttttaaggatgtgaaataaagtagtactcactccatcatgatatgcactcaataat |
17846 |
T |
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| Q |
101 |
tgattaatttaagcaataaataaatagtccacactgcctcttgagtgtaagatatctctcagaatgtcacttcagtacaaaaacatgcacatgaatgata |
200 |
Q |
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| T |
17845 |
tgattaatttaagcaataaataaatagtccacactgcctcttgagtgtaagatatctctcagaatgtcacttcagtacaaaaacatgcacatgaatgata |
17746 |
T |
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| Q |
201 |
aaagaactcaaacaagggcaaagacattgttcctttgattgtttttc |
247 |
Q |
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| T |
17745 |
aaagaactcaaacaagggcaaagacattgttcctttgattgtttttc |
17699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 42920386 - 42920632
Alignment:
| Q |
1 |
gcagttttttacaagccatcactggaaaattgaaagtaaaatctttttaaggatgtgaaataaagtagtactcactccatcatgatatgcactcaataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42920386 |
gcagttttttacaagccatcactggaaaattgaaagtaaaatctttttaaggatgtgaaataaagtagtactcactccatcatgatatgcactcaataat |
42920485 |
T |
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| Q |
101 |
tgattaatttaagcaataaataaatagtccacactgcctcttgagtgtaagatatctctcagaatgtcacttcagtacaaaaacatgcacatgaatgata |
200 |
Q |
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| T |
42920486 |
tgattaatttaagcaataaataaatagtccacactgcctcttgagtgtaagatatctctcagaatgtcacttcagtacaaaaacatgcacatgaatgata |
42920585 |
T |
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| Q |
201 |
aaagaactcaaacaagggcaaagacattgttcctttgattgtttttc |
247 |
Q |
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| T |
42920586 |
aaagaactcaaacaagggcaaagacattgttcctttgattgtttttc |
42920632 |
T |
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