View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_65 (Length: 246)
Name: NF1579_low_65
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 47381889 - 47382114
Alignment:
| Q |
4 |
tgaaccagcagttcttctctcgtctattgttgagctaattgggctggatttatatacttgcagttacctgaagaagcaagagggcttgaaaaggaggtta |
103 |
Q |
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| T |
47381889 |
tgaaccagcagttcttgtctcgtttattgttgagctaattgggctggatttatattctttcagttacctgaagaagcaagagggcttgaaaaggaggtta |
47381988 |
T |
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| Q |
104 |
gtcagatagttaaggagaaagatgaaaatgttggcaaccaagaatttgaaaacg-aaggccataatttaagatttatcttgtatagtaacattagccaac |
202 |
Q |
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| T |
47381989 |
ggcagatagttaaggagaaagatgaagctgttcgcaatcaagaatttgaaaaggtaaggccataatttaagatttagcttgca---taacattaaccaac |
47382085 |
T |
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| Q |
203 |
atttttaggatactcaaccaccttttttc |
231 |
Q |
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| T |
47382086 |
attttaaggatacttaaccaccttttttc |
47382114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 47817387 - 47817617
Alignment:
| Q |
2 |
tctgaaccagcagttcttctctcgtctattgttgagctaattgggctggatttatatacttgcagttacctgaagaagcaagagggcttgaaaaggaggt |
101 |
Q |
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| T |
47817387 |
tctgtaccagcagttcttgtctcgtctattgttgagctaattgagctggatttatattcttgcagttacctgaagaagcaagagggcttgaaaaagaggt |
47817486 |
T |
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| Q |
102 |
tagtcagatagttaaggagaaagatgaaaatgttggcaaccaagaatttgaaaacg-aaggccataatttaagatttatcttgtatagtaacattagcca |
200 |
Q |
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| T |
47817487 |
taggcagatagttaaggagaaagatgaagctattcgtgatcaagaatttgaaaaggtaaggccataatttaagatttagcatgta---taacattaacca |
47817583 |
T |
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| Q |
201 |
acatttttaggatactcaaccaccttttttccta |
234 |
Q |
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| T |
47817584 |
acatttttaggatacttaaccaccttttttccta |
47817617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 40244566 - 40244718
Alignment:
| Q |
3 |
ctgaaccagcagttcttctctcgtctattgttgagctaattgggctggatttatatacttgcagttacctgaagaagcaagagggcttgaaaaggaggtt |
102 |
Q |
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| T |
40244566 |
ctgaaccagcagttcttttctcgtctattgttgagctaattgtgccagatttacatacttgcagttacctgaagaggcaagaggtcttgaaaaggaggtt |
40244665 |
T |
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| Q |
103 |
agtcagatagttaaggagaaagatgaaaatgttggcaaccaagaatttgaaaa |
155 |
Q |
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| T |
40244666 |
aggcagatagtaaaggagaaagatgaagctgttcgcaaccaagaatttgaaaa |
40244718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 40244757 - 40244789
Alignment:
| Q |
200 |
aacatttttaggatactcaaccaccttttttcc |
232 |
Q |
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| T |
40244757 |
aacatttttaggatactcaaccaccttctttcc |
40244789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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