View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1579_low_68 (Length: 243)
Name: NF1579_low_68
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_68 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 19800076 - 19799879
Alignment:
| Q |
34 |
ttcaaaatcaaagatcttggtaccctcaaat--------ggacttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgttt |
125 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
19800076 |
ttcaaaattaaagatcttggtaccctcaaatatttcttaggacttgaagttgcttattcccaaagtggtatttctct--atgtcagagaaagtactgttt |
19799979 |
T |
|
| Q |
126 |
ggatttactacaagattatggtcttctttgtactaaaccagtcactacaccttctgatccatctatcaagttacacaatgatagttcaaatgctttccct |
225 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19799978 |
ggatttactacaagattatggtcttttttgtactaaaccagacactacaccttctgatccatctatcaggttacacaatgatagttcaaatgctttccct |
19799879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 8121839 - 8121641
Alignment:
| Q |
34 |
ttcaaaatcaaagatcttggtaccctcaaat---------ggacttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgtt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
8121839 |
ttcaaaatcaaagatcttggtaccctcaaatatttttttaggacttgaagttgctcattcccaaagtggcatttctct--atgtcagagaaagtattgtc |
8121742 |
T |
|
| Q |
125 |
tggatttactacaagattatggtcttctttgtactaaaccagtcactacaccttctgatccatctatcaagttac--acaatgatagttcaaatgctttc |
222 |
Q |
| |
|
|||||||| | ||||| | || |||||| || | |||||||| || |||||||||| |||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
8121741 |
tggatttattgcaagactcggggcttcttggttccaaaccagttac--caccttctgacccatctatcaagttacatataatgatagttcaaatgctttc |
8121644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 214
Target Start/End: Original strand, 17131223 - 17131410
Alignment:
| Q |
33 |
tttcaaaatcaaagatcttggtaccctcaaat--------ggacttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgtt |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||||| |
|
|
| T |
17131223 |
tttcaaaatcaaatatcttggtaccctcaagtatttcctgggacttgaagttgctcattcacaaggtggtatttctct--atgccagagaaaatattgtc |
17131320 |
T |
|
| Q |
125 |
tggatttactacaagattatggtcttctttgtactaaaccagtcactacaccttctgatccatctatcaagttacacaatgatagttcaa |
214 |
Q |
| |
|
||||||| |||| |||| |||||||| || | ||||| || |||||||| || ||||| || ||||| ||||||||||||||||||| |
|
|
| T |
17131321 |
tggatttgttacatgattcaggtcttctgggttccaaaccggttactacaccatcagatccttccatcaaattacacaatgatagttcaa |
17131410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 14040480 - 14040623
Alignment:
| Q |
68 |
cttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgtttggatttactacaagattatggtcttctttgtactaaaccagt |
167 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| | | |||| ||||| |||||| |||||||| | || |||| || | ||| | | ||||| || |
|
|
| T |
14040480 |
cttgaagttgctcattctcaaagtggtatttctttgt--gtcaaagaaaatattgtctggatttattgcatgatttaggattgcttggctcaaaacctgt |
14040577 |
T |
|
| Q |
168 |
cactacaccttctgatccatctatcaagttacacaatgatagttca |
213 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
14040578 |
tactacaccttctgatccctcaatcaagttacacaatgatagttca |
14040623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 34 - 217
Target Start/End: Complemental strand, 19914843 - 19914657
Alignment:
| Q |
34 |
ttcaaaatcaaagatcttggtaccctcaaat--------ggacttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgttt |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19914843 |
ttcaaaatcaaagatcttggtaccctcaaatattttttaggacttgaagttgctcattctcagagtggtatttctct--atgtcagagaaagtattgttt |
19914746 |
T |
|
| Q |
126 |
ggatttactacaagattatggtcttctttgtactaaaccagtcactacaccttctgatccatctatcaagttacacaatgatagttcaaatg |
217 |
Q |
| |
|
||||||||| ||||||| ||| | ||| || |||||||||||||||||| |||| |||||||| |||||||| ||||||||| |||||| |
|
|
| T |
19914745 |
ggatttactgcaagattcaggtttccttggttctaaaccagtcactacac---ctgacccatctattaagttacataatgatagtccaaatg |
19914657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 34978462 - 34978332
Alignment:
| Q |
86 |
caaagtggtatttctctctatgtcagagaaagtattgtttggatttactacaagattatggtcttctttgtactaaaccagtcactacaccttctgatcc |
185 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||| |||| ||| ||||||||| |||| ||| || |||||||| ||||||||||||||||||| |
|
|
| T |
34978462 |
caaagtggtatttctctatat--catagaaagtattgtctggacttattacaagattcatgtctccttggttctaaaccaatcactacaccttctgatcc |
34978365 |
T |
|
| Q |
186 |
atctatcaagttacacaatgatagttcaaatgc |
218 |
Q |
| |
|
||||||||||||||| ||||||| || |||||| |
|
|
| T |
34978364 |
atctatcaagttacataatgataattaaaatgc |
34978332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 1529479 - 1529294
Alignment:
| Q |
34 |
ttcaaaatcaaagatcttggtaccctcaaat--------ggacttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgttt |
125 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| |||||||| |||| || ||||| |||||| | |||||| ||||| |||||||| |
|
|
| T |
1529479 |
ttcaaaatcaaagaagttggtaccctcaaatactttttgggacttcaagttgctcattcccacagtggcatttcttt--atgtcaaagaaaatattgttt |
1529382 |
T |
|
| Q |
126 |
ggatttactacaagattatggtcttctttgtactaaaccagtcactacaccttctgatccatctatcaagttacacaatgatagttca |
213 |
Q |
| |
|
|||||| || || |||| ||| | ||| || | ||||| || ||||||||||||||||| || ||||| ||||||||||||| |||| |
|
|
| T |
1529381 |
ggatttgctgcatgattcaggtatccttggttccaaacctgttactacaccttctgatccctccatcaaattacacaatgataattca |
1529294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University