View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_7 (Length: 604)
Name: NF1579_low_7
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 16 - 571
Target Start/End: Complemental strand, 37472220 - 37471665
Alignment:
| Q |
16 |
atattttctggagattcaacataaaagacgtatcaagataatgaaaacacaaattgttcaatttgtaaatcaaacatagcttcaaacttgttatctccac |
115 |
Q |
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| T |
37472220 |
atattttctggagattcaacataaaagacgtatcaagataatgaaaacacaaattgttcaatttgtaaatcaatcatagcttcaaacttgttatctcctc |
37472121 |
T |
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| Q |
116 |
ttcaaaatacaccttatcgacctaaaagttcccactagctttgtttctgtggcttcacttgtccaaccatcaaacactaatttatagctatccatcgttc |
215 |
Q |
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| T |
37472120 |
ttcaaaatacaccttatcgacctaaaagttcccactagctttgtttctgtggcttcacttgtccaaccatcaaacactaatttatagctatccatcgttc |
37472021 |
T |
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| Q |
216 |
tgtgtcgaagtagtctgccgttctggcagtggaagaagtcctaaactaattgtatgataggaataactcaacctctaagagctctgaatattcccatcat |
315 |
Q |
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| T |
37472020 |
tgtgtcgaagtagtctgccgttctggcagtggaagaagtcctaaactaattgtatgataggaataactcaacctctaagaactctgaatattcccatcat |
37471921 |
T |
|
| Q |
316 |
ccccctgttagtgggatatttggcnnnnnnncagttgctgggaattacaaaccgtggggactacttttcctcggtgtatctttacccttttcaaaactaa |
415 |
Q |
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| T |
37471920 |
ccccctgttagagggatatttggcttttgttcagttgctgggaattacaaaccgtggggactacttttcctcggtgtatctttacccttttcaaaactaa |
37471821 |
T |
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| Q |
416 |
tgaactgtccgacagatagttccccttcacccagttatgttccagatcttatcaagagaacagtaacaatgtaactctcacattaaacatggttttcaaa |
515 |
Q |
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| T |
37471820 |
tgaactgaccgacgaatagttccccttcacccagttatgttccagatcttatcaagagaacagtaacaatgtaactctcacattaaacatggttttcaaa |
37471721 |
T |
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| Q |
516 |
ttaggtgggttctatagagtcattagtatacatagtctaatcagcatgctctttac |
571 |
Q |
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| T |
37471720 |
ttaggtgggttctatagagtcattagtatacatagtctaatcagcatgctctttac |
37471665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 22342835 - 22342792
Alignment:
| Q |
282 |
ctcaacctctaagagctctgaa-tattcccatcatccccctgtt |
324 |
Q |
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| T |
22342835 |
ctcaacctctaagagctctgaattattcccatcatccccctgtt |
22342792 |
T |
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