View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_73 (Length: 231)
Name: NF1579_low_73
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_73 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 33167161 - 33166957
Alignment:
| Q |
12 |
gataattcttgtatttaattactccttcaaaataacccttttttcaatataatgcaaaattatcaatctccctcttcttcaaattttcaaaatcctctca |
111 |
Q |
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| T |
33167161 |
gataattcttgtatttaattactccttcaaaataacccttttttcaatataatgcaaaatcatcaatctccctcttcttcaaattttcaaaatcctctca |
33167062 |
T |
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| Q |
112 |
atcttcaaactcgtccttttcaaacccaaaatactaata-atttttcattttctagacccccatttccataacaatttcccatgtttcaatcaccaccaa |
210 |
Q |
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| T |
33167061 |
atcttcaaactcgtccttttcaaactcaaaatactaatatttttttcattttctagacccccatttccataacaatttcccatgtttcaatcaccaccaa |
33166962 |
T |
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| Q |
211 |
ctaac |
215 |
Q |
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||||| |
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| T |
33166961 |
ctaac |
33166957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 49284918 - 49284849
Alignment:
| Q |
54 |
ttcaatataatgcaaaattatcaatctccctcttcttcaaattttcaaaatcctctcaatcttcaaactc |
123 |
Q |
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| T |
49284918 |
ttcaatttcatgcaaaattttcaacctccctcttattcaaattttgaaaatccttcaaatcttcaaactc |
49284849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 49284821 - 49284765
Alignment:
| Q |
140 |
aaatactaataatttttcattttctagacccccatttccataacaatttcccatgttt |
197 |
Q |
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| T |
49284821 |
aaataataataatttttcattttctaga-cctcatttccgtatcaatttctcatgttt |
49284765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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