View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1579_low_8 (Length: 603)

Name: NF1579_low_8
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1579_low_8
NF1579_low_8
[»] chr4 (14 HSPs)
chr4 (20-398)||(6992514-6992892)
chr4 (206-591)||(7044222-7044603)
chr4 (182-565)||(7000971-7001345)
chr4 (206-369)||(7037684-7037847)
chr4 (206-369)||(7025863-7026026)
chr4 (434-565)||(7009958-7010089)
chr4 (195-369)||(7011251-7011425)
chr4 (206-369)||(7018895-7019058)
chr4 (443-591)||(6992145-6992295)
chr4 (206-374)||(7051516-7051685)
chr4 (469-565)||(7036582-7036678)
chr4 (469-585)||(7025236-7025352)
chr4 (469-577)||(7051228-7051336)
chr4 (469-585)||(7017975-7018092)
[»] chr3 (1 HSPs)
chr3 (208-272)||(46185214-46185278)
[»] chr2 (1 HSPs)
chr2 (207-272)||(5877122-5877187)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 398
Target Start/End: Complemental strand, 6992892 - 6992514
Alignment:
Q  20 tttctataacgtatccggaacaaactcacaagtgtttacgtgagcagataaactcgaataagacaatctaaacatagaaaattttgtgaccagcaaaacc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  6992892 tttctataacgtatccggaacaaactcacaagtgtttacgtgagcagataaactcgaataacacaatctaaacatagaaaattatgtgaccagtaaaacc 6992793  T
Q  120 atacatgtgtgata-tacatagccagctatgcacattaccaatactgtcaaaacaatattcacaaaaacaaataaattgtgatttgtaaattacctattt 218  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6992792 atacatgtgtgataatacatagccagcaatgcacattaccaatactgtcaaaacaatattcacaaaaacaaataaattgtgatttgtaaattacctattt 6992693  T
Q  219 gataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatcattttctgatttgataaaatagta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| ||    
T  6992692 gataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttttgaggatcgttttctgatttgataaaataata 6992593  T
Q  319 aaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaaatatatatgaacatacaaatacattactt 398  Q
     ||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||||    
T  6992592 gaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatc-aaatatatatgaacacacaactacattactt 6992514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 206 - 591
Target Start/End: Complemental strand, 7044603 - 7044222
Alignment:
Q  206 aaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatcattttctgatt 305  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||    
T  7044603 aaattacctatttgataggcaagggcagaaaaagaagaacaaccaggaccaccagatatccaaagcataagagggtctttcttaggattattttctgatt 7044504  T
Q  306 tgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaaatatatatgaacatacaaatacattacttacttgct 405  Q
    ||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  7044503 tgacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaaatatatatgaacatacaaatacattactt----gct 7044408  T
Q  406 acactgtacccccattaacaggaggtgaaaatgaaataaaatatggaatgattaagattactgaccctgtttcaagttcaaatggaagaggtccttgaaa 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  7044407 acactgtacccccattaacaggaggtgaaaatgaaataaaatatggaatgattaaaattgctgaccctgtttcaagttcaaatggaagaggtccttgaaa 7044308  T
Q  506 accaggaagatgttcaacctttgagccataagcttcaagaggagttaacatctgcaaacttaaaagtccaaatgcaagtataatct 591  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||  ||||||| |||||    
T  7044307 accaggaagatgttcaacctttgagcgagaagcttcaagaggagttaacatctgcaaactaaaaagtccaagagcaagtagaatct 7044222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 182 - 565
Target Start/End: Complemental strand, 7001345 - 7000971
Alignment:
Q  182 aaaaacaaataaattgtgatttgtaaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggt 281  Q
    ||||||||  || |||| ||||| ||||||||||||||||||  |||| |||||||||||||||| |||||||| |||| |||||||||||||||||| |    
T  7001345 aaaaacaataaagttgtaatttgaaaattacctatttgatagaaaagggcagaaaaagaagaacaaccaggacctccagataaccaaagcataagaggat 7001246  T
Q  282 ctttctcaggatcattttctgatttgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaaatatatatgaac 381  Q
    |||||| ||||| | |||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||   || ||||| |    
T  7001245 ctttctgaggattactttctgatttgacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatcaa---atttatgacc 7001149  T
Q  382 atacaaatacattacttacttgctacactgtacccccattaacaggaggtgaaaatgaaataaaatatggaatgattaagatt--actgaccctgtttca 479  Q
       ||| ||||    |||||||||||| || |||||||||  |||||||||||||||||| ||||||||||||||||| ||||   || |||||||||||    
T  7001148 ---caactaca----ttacttgctacaatgcacccccatt-gcaggaggtgaaaatgaaacaaaatatggaatgattaggattgctctcaccctgtttca 7001057  T
Q  480 agttcaaatggaagaggtccttgaaaaccaggaagatgttcaacctttgagccataagcttcaagaggagttaacatctgcaaact 565  Q
    |||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7001056 agttcaaaaggaagtggaccttgaaaaccaggaagctgttcaacctttgagccataagcttcaagaggagttaacatatgcaaact 7000971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 206 - 369
Target Start/End: Complemental strand, 7037847 - 7037684
Alignment:
Q  206 aaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatcattttctgatt 305  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |    
T  7037847 aaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtctttctgaggattattttctgact 7037748  T
Q  306 tgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaa 369  Q
    |||||||||| || |||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  7037747 tgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaa 7037684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 206 - 369
Target Start/End: Complemental strand, 7026026 - 7025863
Alignment:
Q  206 aaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatcattttctgatt 305  Q
    ||||||||||||| |||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |    
T  7026026 aaattacctatttcatacacaagtccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctgaggattattttctgact 7025927  T
Q  306 tgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaa 369  Q
    | | ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  7025926 ttacaaaatagtaaaacacttgcatgtcatcatttgaatctcctaaccccacgtacctatcaaa 7025863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 434 - 565
Target Start/End: Complemental strand, 7010089 - 7009958
Alignment:
Q  434 aaatgaaataaaatatggaatgattaagattactgaccctgtttcaagttcaaatggaagaggtccttgaaaaccaggaagatgttcaacctttgagcca 533  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  7010089 aaatgaaataaaaaatggaatgattaagattactgacccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagcca 7009990  T
Q  534 taagcttcaagaggagttaacatctgcaaact 565  Q
    ||||||||||||||||||||||| ||||||||    
T  7009989 taagcttcaagaggagttaacatatgcaaact 7009958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 195 - 369
Target Start/End: Complemental strand, 7011425 - 7011251
Alignment:
Q  195 ttgtgatttgtaaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatc 294  Q
    |||| ||||| ||||||||||||||||||  ||||||||||| |||||| || |||||||||||||||| ||||||||||||||| ||||||| |||||     
T  7011425 ttgtaatttgaaaattacctatttgatagagaaggccagaaatagaagagcaaccaggaccaccagttatccaaagcataagaggatctttctgaggatt 7011326  T
Q  295 attttctgatttgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaa 369  Q
    | ||||||| || | |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7011325 actttctgactttacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatcaaa 7011251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 206 - 369
Target Start/End: Complemental strand, 7019058 - 7018895
Alignment:
Q  206 aaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatcattttctgatt 305  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||| | ||||| ||||||||| |    
T  7019058 aaattacctatttgatgggcaaggccagaaaaagaagaacaaccaggaccaccagataaccaaagaattagagggtctttttgaggattattttctgact 7018959  T
Q  306 tgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaa 369  Q
    | | |||||| |||||||||||||||||||||| || ||| ||||| |||||||||||||||||    
T  7018958 ttacaaaataataaaacacttgcatgtcatcatctgtttcccctaatcccacgtacctatcaaa 7018895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 443 - 591
Target Start/End: Complemental strand, 6992295 - 6992145
Alignment:
Q  443 aaaatatggaatgattaagattactg--accctgtttcaagttcaaatggaagaggtccttgaaaaccaggaagatgttcaacctttgagccataagctt 540  Q
    |||||||||||||||||||||| ||   |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6992295 aaaatatggaatgattaagattgctctcacccagtttcaagttcaaaaggaagaggtccttgaaaaccaggaagatgttcaacctttgagccataagctt 6992196  T
Q  541 caagaggagttaacatctgcaaacttaaaagtccaaatgcaagtataatct 591  Q
    ||| | |||||||||| | |||| | ||||||||||||||||||| |||||    
T  6992195 caatatgagttaacatattcaaagtaaaaagtccaaatgcaagtagaatct 6992145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 206 - 374
Target Start/End: Complemental strand, 7051685 - 7051516
Alignment:
Q  206 aaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatcattttctgatt 305  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||| |    
T  7051685 aaattacctatttcataagcaagtccagaaaaagaagaacagccaggaccaccagataaccaaagcataagaggatctttctgaggattattttctgact 7051586  T
Q  306 tgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatc-aaaatata 374  Q
    | | |||||| || |||||||||||||| |||| || ||| |||||||||| ||||||||| ||||||||    
T  7051585 taacaaaataatagaacacttgcatgtcgtcatctgtttcccctaaccccaagtacctatcgaaaatata 7051516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 469 - 565
Target Start/End: Complemental strand, 7036678 - 7036582
Alignment:
Q  469 accctgtttcaagttcaaatggaagaggtccttgaaaaccaggaagatgttcaacctttgagccataagcttcaagaggagttaacatctgcaaact 565  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7036678 accctgtttcaagttgaaaaggaagaggtccttgaaaaccaggaaggtgttcaacctttgagccataagcttcaagaggagttaacatatgcaaact 7036582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 469 - 585
Target Start/End: Complemental strand, 7025352 - 7025236
Alignment:
Q  469 accctgtttcaagttcaaatggaagaggtccttgaaaaccaggaagatgttcaacctttgagccataagcttcaagaggagttaacatctgcaaacttaa 568  Q
    |||| |||||||||||||| || || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  7025352 accccgtttcaagttcaaaagggagtggcccttgaaaaccaggaaggtgttcaacctttgagccataagcttcaagaggagttaacatatgcaaactaaa 7025253  T
Q  569 aagtccaaatgcaagta 585  Q
    |||| |||| |||||||    
T  7025252 aagtgcaaaagcaagta 7025236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 469 - 577
Target Start/End: Complemental strand, 7051336 - 7051228
Alignment:
Q  469 accctgtttcaagttcaaatggaagaggtccttgaaaaccaggaagatgttcaacctttgagccataagcttcaagaggagttaacatctgcaaacttaa 568  Q
    |||| |||||||||||||| || || || ||||||||||||||||| ||||||||  |||||||| |||||||||||||||||||||| |||||||| ||    
T  7051336 accccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccagaagcttcaagaggagttaacatatgcaaactaaa 7051237  T
Q  569 aagtccaaa 577  Q
    |||| ||||    
T  7051236 aagtgcaaa 7051228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 469 - 585
Target Start/End: Complemental strand, 7018092 - 7017975
Alignment:
Q  469 accctgtttcaagttcaaatggaagaggtccttgaaaa-ccaggaagatgttcaacctttgagccataagcttcaagaggagttaacatctgcaaactta 567  Q
    |||| |||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||   ||| ||| ||||||||  | |    
T  7018092 accccgtttcaagttcaaaaggaagtggtccttgaaaaaccaggaagctgttcaacctttgagccataagcttcaatgtgagataatatctgcaagataa 7017993  T
Q  568 aaagtccaaatgcaagta 585  Q
    ||||| |||| |||||||    
T  7017992 aaagtgcaaaagcaagta 7017975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 46185214 - 46185278
Alignment:
Q  208 attacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagca 272  Q
    ||||||||||| | |||||||||||||||||| ||| || |||||||||||||||||||||||||    
T  46185214 attacctatttcaaaggcaaggccagaaaaagcagagcaaccaggaccaccagttaaccaaagca 46185278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 5877187 - 5877122
Alignment:
Q  207 aattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagca 272  Q
    |||||||||||| |||  |||||||||| |||| ||| || ||||| |||||||||| ||||||||    
T  5877187 aattacctatttcatacacaaggccagacaaagcagagcaaccaggtccaccagttagccaaagca 5877122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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