View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_9 (Length: 541)
Name: NF1579_low_9
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 23 - 513
Target Start/End: Original strand, 43408095 - 43408585
Alignment:
| Q |
23 |
aatggaatgcactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggt |
122 |
Q |
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| T |
43408095 |
aatggaatgcactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggt |
43408194 |
T |
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| Q |
123 |
ccaacaacatctgtcaaagaaagattagtggttgctgttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtac |
222 |
Q |
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| T |
43408195 |
ccaacaacatctgtcaaagaaagattagtggttgctgttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtac |
43408294 |
T |
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| Q |
223 |
ctatgaggaggagatcagccctaattcacactcaaaaccactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacatgaacgttca |
322 |
Q |
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| T |
43408295 |
ctatgaggaggagatcagccctaattcacactcaaaaccactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacatgaacgttca |
43408394 |
T |
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| Q |
323 |
tgttcgtttctttagaagccatgactatccgcgtcatcagcagcaacagcaatatggatctcttctagcacttccagtttttgagagaggaagtgggaca |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408395 |
tgttcgtttctttagaagccatgactatccgcgtcatcagcagcaacagcaatatggatctcttctagcacttccagtttttgagagaggaagtgggaca |
43408494 |
T |
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| Q |
423 |
tgccttggtgttattgagtttgttatctccaatcaaaccctcatcaattaccgtccacaacttgatcatctctctaatgctcttgaggtat |
513 |
Q |
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| T |
43408495 |
tgccttggtgttattgagtttgttatctccaatcaaaccctcatcaattaccgtccacaacttgatcatctctctaatgctcttgaggtat |
43408585 |
T |
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