View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15800_high_1 (Length: 615)
Name: NF15800_high_1
Description: NF15800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15800_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 406
Target Start/End: Original strand, 17173704 - 17174100
Alignment:
| Q |
10 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctctgagctttcaaaatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17173704 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctttgagctttcaaaatt |
17173803 |
T |
|
| Q |
110 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17173804 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
17173903 |
T |
|
| Q |
210 |
attccctttgaactcttacctcggttcttcctcttggcatttaagcggcgcttagtggcgttccagtggttcttgatggagttctcagtgcgccctggca |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17173904 |
attccctttgaactcttacctcggttcttcctcttgggattttggcgacgcttagtggcattccagtggttcttgatggagttctcagtgcgccctggca |
17174003 |
T |
|
| Q |
310 |
atctccttgaaatttcagtccacttgtctccaactattttgtgagcttcgattagtattttgtcctcctcttcggtccatgaatccttctgaaatca |
406 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
17174004 |
atctccttgaaatttcagtccacttgtttccaactattttgtgagcttcgattagtattttgtcttcctcttcggtccatgaatccttctgaaatca |
17174100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 10 - 399
Target Start/End: Complemental strand, 13644052 - 13643663
Alignment:
| Q |
10 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctctgagctttcaaaatt |
109 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||| ||||| | |||||||||||||||||||||| |||||||||||| || |||||| |||| |
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|
| T |
13644052 |
catcatcatcattgaacatcattggcacatagccaccaatttcatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatt |
13643953 |
T |
|
| Q |
110 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
209 |
Q |
| |
|
| ||||| |||| |||||||||| ||||| |||||| |||||||||||||| ||| ||| |||||||||||||||||||||| ||| ||| |
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| T |
13643952 |
tggctgattcccgatattcatcatgctcagagaattagtcatcatctccttttcaactttcttggcacaagtgacttccattatgtatttcaaaagcagt |
13643853 |
T |
|
| Q |
210 |
attccctttgaactcttacctcggttcttcctcttggcatttaagcggcgcttagtggcgttccagtggttcttgatggagttctcagtgcgccctggca |
309 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||| || | || |||||||||||||||||| ||||| |||| ||||||||| |||||||| | || |
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|
| T |
13643852 |
gttccctttgaactgttacctcgattctttttcttggctttcaggcagcgcttagtggcgttccaatggtttttgacggagttctcggtgcgccccgaca |
13643753 |
T |
|
| Q |
310 |
atctccttgaaatttcagtccacttgtctccaactattttgtgagcttcgattagtattttgtcctcctcttcggtccatgaatccttct |
399 |
Q |
| |
|
|||| ||||||||||| | |||||||| |||||||| ||||||||||||| | ||||||||| ||||| |||||||||| ||||||| |
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|
| T |
13643752 |
atcttcttgaaatttccgcccacttgttaccaactatcttgtgagcttcgaccaatattttgtcttcctcctcggtccatgcctccttct |
13643663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 10 - 399
Target Start/End: Complemental strand, 13706501 - 13706112
Alignment:
| Q |
10 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctctgagctttcaaaatt |
109 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||| |||| | |||||||||||||||||||||| |||||||||||| || |||||| |||| |
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|
| T |
13706501 |
catcatcatcattgaacatcattggcacatagccaccaattccatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatt |
13706402 |
T |
|
| Q |
110 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
209 |
Q |
| |
|
| ||||| |||| ||||||||||| ||||| ||||| |||||||||||||| ||| ||| || ||||||||||||||||||| ||| ||| |
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|
| T |
13706401 |
tggctgattcccgatattcatcatgctcggagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagcagt |
13706302 |
T |
|
| Q |
210 |
attccctttgaactcttacctcggttcttcctcttggcatttaagcggcgcttagtggcgttccagtggttcttgatggagttctcagtgcgccctggca |
309 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||| || ||| |||||||||| |||||||||||| |||| ||||||||| |||||||| |||| |
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|
| T |
13706301 |
gttccctttgaactgttacctcgattctttttcttggctttctggcgtcgcttagtggtgttccagtggtttttgacggagttctcggtgcgccccggca |
13706202 |
T |
|
| Q |
310 |
atctccttgaaatttcagtccacttgtctccaactattttgtgagcttcgattagtattttgtcctcctcttcggtccatgaatccttct |
399 |
Q |
| |
|
||||||||| |||||| | |||||||| |||||||| ||||||||||| || | ||||||||| ||||| ||||||||||| ||||||| |
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|
| T |
13706201 |
atctccttgcaatttccgcccacttgttaccaactatcttgtgagcttcaatcaatattttgtcttcctcctcggtccatgactccttct |
13706112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 471 - 556
Target Start/End: Original strand, 17174322 - 17174407
Alignment:
| Q |
471 |
aataagtttttcacataaatcatgaacaagacacaagacggttgtcaaaacttcatgctgctatatattagtcttacaaatgagac |
556 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
17174322 |
aataagtttttaacataaatcatgaacaagacacaagacggttgtcaaaacttcatgctactatatattagtcttacaaatgagac |
17174407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 258 - 399
Target Start/End: Original strand, 13467837 - 13467978
Alignment:
| Q |
258 |
cgcttagtggcgttccagtggttcttgatggagttctcagtgcgccctggcaatctccttgaaatttcagtccacttgtctccaactattttgtgagctt |
357 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||| || |||| ||| |||| |||||||| |||||||| ||||||| ||||| |||| |
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|
| T |
13467837 |
cgcttagtggagttccagcggttcttgatggagttctcagtgcgtccaggcagtctacttgcaatttcagcccacttgtttccaactgccttgtgtgctt |
13467936 |
T |
|
| Q |
358 |
cgattagtattttgtcctcctcttcggtccatgaatccttct |
399 |
Q |
| |
|
|||| | || | |||| ||||||||| ||||||| ||||||| |
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|
| T |
13467937 |
cgatcaataatatgtcttcctcttcgctccatgactccttct |
13467978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 270 - 390
Target Start/End: Original strand, 17067590 - 17067710
Alignment:
| Q |
270 |
ttccagtggttcttgatggagttctcagtgcgccctggcaatctccttgaaatttcagtccacttgtctccaactattttgtgagcttcgattagtattt |
369 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| |||||||||||| |||||||||| | |||||||| |||||| ||| |||||||| || || |||| |
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|
| T |
17067590 |
ttccaatgattcttaatggagttctcagtgcgtcctggcaatctctttgaaatttctgcccacttgttcccaacttctttatgagcttcaatcagaattt |
17067689 |
T |
|
| Q |
370 |
tgtcctcctcttcggtccatg |
390 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
17067690 |
tgtcctcctcttcgttccatg |
17067710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 13425579 - 13425633
Alignment:
| Q |
303 |
cctggcaatctccttgaaatttcagtccacttgtctccaactattttgtgagctt |
357 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||| |
|
|
| T |
13425579 |
cctggcaatcttcttgaaatttcagtccagttgtctccaaatatgttgtgggctt |
13425633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 10 - 417
Target Start/End: Original strand, 34653473 - 34653880
Alignment:
| Q |
10 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctctgagctttcaaaatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| | | |||| || ||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
34653473 |
catcatcaccattgaacatcattggagcatacccatcaatttcctcatttggattaaccaaaccttcagagctaaaatcactctccgagctttcaaagtt |
34653572 |
T |
|
| Q |
110 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
209 |
Q |
| |
|
| ||||| || | ||||| ||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| || ||| |
|
|
| T |
34653573 |
tgggtgattcccaaatttcatcacgctcgtagaattcgtcatcagctccttttcagcttccttagcatcattgacttccattatgtatttcaagagtagt |
34653672 |
T |
|
| Q |
210 |
attccctttgaactcttacctcggttcttcctcttggcatttaagcggcgcttagtggcgttccagtggttcttgatggagttctcagtgcgccctggca |
309 |
Q |
| |
|
||||||||||||| |||| || ||||| ||||| | ||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||| ||| |
|
|
| T |
34653673 |
tttccctttgaactattactccgattctttctcttagtattatggcggcgcttggtggcgttccagtggttcttgattgagttctcggtgcgcccttgca |
34653772 |
T |
|
| Q |
310 |
atctccttgaaatttcagtccacttgtctccaactattttgtgagcttcgattagtattttgtcctcctcttcggtccatgaatccttctgaaatcatac |
409 |
Q |
| |
|
|||| ||| |||||||| |||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
34653773 |
ttctctttgcaatttcagcccacttgttcccaactatcttatgagcttcgattagtattttgtcctcttcttcggtccatgaatccttctacaatcatac |
34653872 |
T |
|
| Q |
410 |
ataacaat |
417 |
Q |
| |
|
| |||||| |
|
|
| T |
34653873 |
aaaacaat |
34653880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 257 - 391
Target Start/End: Complemental strand, 25522755 - 25522621
Alignment:
| Q |
257 |
gcgcttagtggcgttccagtggttcttgatggagttctcagtgcgccctggcaatctccttgaaatttcagtccacttgtctccaactattttgtgagct |
356 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||| || || || || | |||| ||| |||||||| |||||| |||||||| ||||||||| |
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|
| T |
25522755 |
gcgcttagcggagttccaacggttcttgatggagttctcggtacgtccaggaagtctctttgcaatttcagcaaacttgttcccaactatcttgtgagct |
25522656 |
T |
|
| Q |
357 |
tcgattagtattttgtcctcctcttcggtccatga |
391 |
Q |
| |
|
||||| | ||||||||| |||||||| ||||||| |
|
|
| T |
25522655 |
tcgatcaatattttgtcttcctcttcactccatga |
25522621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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