View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15800_high_13 (Length: 256)
Name: NF15800_high_13
Description: NF15800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15800_high_13 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 43378 - 43163
Alignment:
| Q |
17 |
aaactctaatggtaaaatccatccatttgtgnnnnnnntcccagagagtttgataaaagaaagctccaaatccaccaggaccaggagaactttctcatag |
116 |
Q |
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| T |
43378 |
aaactctaatggtaaaatccatccatttgtgaaaaaaatcccagaaagtttgataaaagaaagctccaaatccaccaggaccaggagaactttctcatag |
43279 |
T |
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| Q |
117 |
catttattgcactagtgatcaagtgagggagaactttctcagcaaaaaagatacatgtaggtgttagagaactaatgagaaaaatttgtgtacaatacat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43278 |
catttattgcactagtgatcaagtgagggagaactttctcagcaaaaaagatacatgtaggtgttagagaactaatgagaaaaatttgtgtacaata-at |
43180 |
T |
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| Q |
217 |
aatatgcagcatcatat |
233 |
Q |
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||||||||||||||||| |
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| T |
43179 |
aatatgcagcatcatat |
43163 |
T |
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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 24415697 - 24415623
Alignment:
| Q |
159 |
caaaaaagatacatgtaggtgttagagaactaatgagaaaaatttgtgtacaatacataatatgcagcatcatat |
233 |
Q |
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| T |
24415697 |
caaaaaagatacaggtagatgttagagaactaatgagaaaaatttgtgtacaacaaataatatgcaacatcatat |
24415623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 24415886 - 24415833
Alignment:
| Q |
58 |
cagagagtttgataaaagaaagctccaaatccaccaggaccaggagaactttct |
111 |
Q |
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|||| |||||||||||||||||||||||||||| | |||||||||| ||||||| |
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| T |
24415886 |
cagaaagtttgataaaagaaagctccaaatccatcgggaccaggagcactttct |
24415833 |
T |
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