View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15800_high_4 (Length: 440)

Name: NF15800_high_4
Description: NF15800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15800_high_4
NF15800_high_4
[»] chr7 (1 HSPs)
chr7 (19-432)||(4031945-4032356)
[»] chr3 (2 HSPs)
chr3 (319-402)||(7160667-7160750)
chr3 (188-234)||(14799972-14800018)
[»] chr2 (2 HSPs)
chr2 (322-419)||(35666554-35666652)
chr2 (177-213)||(28790125-28790161)
[»] chr1 (2 HSPs)
chr1 (336-402)||(31587475-31587542)
chr1 (189-239)||(23190162-23190212)
[»] chr8 (3 HSPs)
chr8 (178-213)||(10650117-10650152)
chr8 (336-407)||(20311207-20311279)
chr8 (336-407)||(21104844-21104916)
[»] chr4 (1 HSPs)
chr4 (359-399)||(17133366-17133406)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 4032356 - 4031945
Alignment:
Q  19 gtttaaacattttgtgtatttaaatgactaa---ccagacgagaaacatgtaaagtgtgcatgatgatggttctccatcaaagtcaccatgaattcaaac 115  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||| |    
T  4032356 gtttaaacattttgtgtatttaaatgactaataaccagacgagaaacatgtacagtgtgcatgatg---gttctccatcaaagtcaccatgaattcaacc 4032260  T
Q  116 atataccgagattaatttgatttagttgtatgcttgggatccacatgaaggtgnnnnnnnntataagaagaaggttgaattgtgttgactttttcaaagt 215  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||         |||  |||||||||||||| |||||| |||||||||||    
T  4032259 atataccgagattaatttgatttagttgtatgcttgggctccacatgaaggtgaaaaaaaaaatac-aagaaggttgaattatgttgattttttcaaagt 4032161  T
Q  216 gtttcacaaatcagagtctgagtggagttcatagtctaagtgcaattcagggtttgagtgcagcagataaaatcaagcacaaaagataaagataacaaga 315  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | |||    
T  4032160 gtttcacaaatcagagtttgagtggagttcatagtctgagtgcaattcagggtctgagtgcagcagataaaatcaagcacaaa-gataaagatagcgaga 4032062  T
Q  316 gaaagcagacacatagcaaatatactagttcctcctacaattcagagtagtccagtcgtcttgcactttcaaagaattttcactatagtcataacttatt 415  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||||    
T  4032061 gaaagcagacacagagcaaatatactagttcctcctacaattcagagtagtccagtcgtcttgcactttcaaaaaaaattcactataatcataacttatt 4031962  T
Q  416 acaagatttcctatgct 432  Q
    |||||| ||| ||||||    
T  4031961 acaagacttcttatgct 4031945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 7160750 - 7160667
Alignment:
Q  319 agcagacacatagcaaatatactagttcctcctacaattcag-agtagtccagtcgtcttgcactttcaaagaattttcactata 402  Q
    |||||||||| ||||| |||||||||||||||||||||| || |||| ||||||| |||||||| ||||||| ||||||||||||    
T  7160750 agcagacaca-agcaattatactagttcctcctacaatttaggagtactccagtcctcttgcacattcaaaggattttcactata 7160667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 14799972 - 14800018
Alignment:
Q  188 ggttgaattgtgttgactttttcaaagtgtttcacaaatcagagtct 234  Q
    ||||||||||||||| |||||||||| |||||||| | |||||||||    
T  14799972 ggttgaattgtgttggctttttcaaaatgtttcacgattcagagtct 14800018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 35666652 - 35666554
Alignment:
Q  322 agacacatagcaaatatactagttcctcctacaattcaga-gtagtccagtcgtcttgcactttcaaagaattttcactatagtcataacttattacaa 419  Q
    ||||||| || || ||||||||||| |||||| || |||| |||||||||||  ||||||||||||| | |||||||||||| |||||||| |||||||    
T  35666652 agacacaaagtaattatactagttcttcctacgatgcagaagtagtccagtctccttgcactttcaagggattttcactataatcataactgattacaa 35666554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 28790161 - 28790125
Alignment:
Q  177 tataagaagaaggttgaattgtgttgactttttcaaa 213  Q
    |||||||||  ||||||||||||||||||||||||||    
T  28790161 tataagaagggggttgaattgtgttgactttttcaaa 28790125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 402
Target Start/End: Complemental strand, 31587542 - 31587475
Alignment:
Q  336 tatactagttcctcctacaattca-gagtagtccagtcgtcttgcactttcaaagaattttcactata 402  Q
    |||||||||||||||||||| ||| |||||||||| ||  |||||||||||||||||||||| |||||    
T  31587542 tatactagttcctcctacaaatcaagagtagtccaatctccttgcactttcaaagaattttcgctata 31587475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 23190162 - 23190212
Alignment:
Q  189 gttgaattgtgttgactttttcaaagtgtttcacaaatcagagtctgagtg 239  Q
    |||||||||| ||||||||||||||||||||| ||| ||| ||||||||||    
T  23190162 gttgaattgtattgactttttcaaagtgtttcgcaagtcatagtctgagtg 23190212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 10650152 - 10650117
Alignment:
Q  178 ataagaagaaggttgaattgtgttgactttttcaaa 213  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10650152 ataagaagaaggttgaattgtgttggctttttcaaa 10650117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 407
Target Start/End: Original strand, 20311207 - 20311279
Alignment:
Q  336 tatactagttcctcctacaattc-agagtagtccagtcgtcttgcactttcaaagaattttcactatagtcat 407  Q
    |||||||||||| | ||||| || ||||||||  ||||  ||||||||||||| |||||||||||||| ||||    
T  20311207 tatactagttccccttacaaatcgagagtagtatagtccccttgcactttcaatgaattttcactataatcat 20311279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 407
Target Start/End: Original strand, 21104844 - 21104916
Alignment:
Q  336 tatactagttcctcctacaattc-agagtagtccagtcgtcttgcactttcaaagaattttcactatagtcat 407  Q
    |||||||||||| | ||||| || ||||||||  ||||  ||||||||||||| |||||||||||||| ||||    
T  21104844 tatactagttccccttacaaatcgagagtagtatagtccccttgcactttcaatgaattttcactataatcat 21104916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 17133366 - 17133406
Alignment:
Q  359 agagtagtccagtcgtcttgcactttcaaagaattttcact 399  Q
    ||||||||||||||  ||||||||||||| |||||||||||    
T  17133366 agagtagtccagtccccttgcactttcaatgaattttcact 17133406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University