View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15800_low_10 (Length: 308)

Name: NF15800_low_10
Description: NF15800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15800_low_10
NF15800_low_10
[»] chr1 (7 HSPs)
chr1 (18-308)||(14104805-14105095)
chr1 (222-308)||(14073858-14073944)
chr1 (222-308)||(14081334-14081420)
chr1 (87-216)||(14081449-14081584)
chr1 (138-216)||(14073973-14074049)
chr1 (18-69)||(20721053-20721104)
chr1 (253-289)||(11837472-11837508)
[»] chr8 (2 HSPs)
chr8 (18-78)||(35495156-35495216)
chr8 (18-78)||(36448010-36448070)
[»] chr6 (4 HSPs)
chr6 (18-78)||(34620782-34620842)
chr6 (18-78)||(34748219-34748279)
chr6 (18-79)||(10400824-10400885)
chr6 (18-78)||(29240581-29240641)
[»] chr5 (3 HSPs)
chr5 (18-78)||(15368139-15368199)
chr5 (25-78)||(3043133-3043186)
chr5 (18-78)||(29922790-29922850)
[»] chr3 (4 HSPs)
chr3 (18-78)||(3845241-3845301)
chr3 (19-78)||(39256572-39256631)
chr3 (25-78)||(52925740-52925793)
chr3 (18-78)||(34867315-34867375)
[»] scaffold0361 (1 HSPs)
scaffold0361 (18-78)||(14242-14302)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 14105095 - 14104805
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttgatgagttcttatttgaatgtttcaaaatcatttttatatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  14105095 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttgatgagatcgtatttgaatgtttcaaaatcatttttatatg 14104996  T
Q  118 gtatatgtggatattaggcaaggacatggtggtagagaagagtacatacaatgcgcatttaggaagaatggtttgaaagagaagacgaaagagatgggtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  14104995 gtatatgtggatattaggcaaggacatggtggtagagaagagtgcatacaatgcgcatttaggaagcttggtttggaagagaagacgaaagagatgggtc 14104896  T
Q  218 tgggtgactaacctatgttgtgagacaacggcgcatgagacctttattagaggcttcagggtgttcttctccactgatgcaactgctacct 308  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  14104895 tggatgactaacctatgttgtgagacaacggcgcatgagacctttattagaggcttcagggtgttcttctccgctgatgcaagtgctacct 14104805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 14073944 - 14073858
Alignment:
Q  222 tgactaacctatgttgtgagacaacggcgcatgagacctttattagaggcttcagggtgttcttctccactgatgcaactgctacct 308  Q
    |||||||| | || ||||||||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14073944 tgactaacttgtgctgtgagacaacggcgcgcgaggcctttattagaggcttcagggtgtttttctccactgatgcaactgctacct 14073858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 14081420 - 14081334
Alignment:
Q  222 tgactaacctatgttgtgagacaacggcgcatgagacctttattagaggcttcagggtgttcttctccactgatgcaactgctacct 308  Q
    |||||||| | || ||||| ||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14081420 tgactaacttgtgctgtgaaacaacggcgcgcgaggcctttattagaggcttcagggtgtttttctccactgatgcaactgctacct 14081334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 14081584 - 14081449
Alignment:
Q  87 tatttgaatgtttcaaaatcatttttatat--ggtatatgtg------gatattaggcaaggacatggtggtagagaagagtacatacaatgcgcattta 178  Q
    |||||||||||||||||||||||| |||||  | ||||||||      |||||||||| ||||||||||||| ||||||||||||||||  ||||||||     
T  14081584 tatttgaatgtttcaaaatcatttctatatatgatatatgtgtggatggatattaggcgaggacatggtggtggagaagagtacataca--gcgcatttc 14081487  T
Q  179 ggaagaatggtttgaaagagaagacgaaagagatgggt 216  Q
    |||| |  |||||| ||||||||  |||||||||||||    
T  14081486 ggaacacaggtttggaagagaagctgaaagagatgggt 14081449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 14074049 - 14073973
Alignment:
Q  138 aggacatggtggtagagaagagtacatacaatgcgcatttaggaagaatggtttgaaagagaagacgaaagagatgggt 216  Q
    ||||||||||||||||||||||||||||||  |||||||| |||| |  |||||| ||||||||  |||||||||||||    
T  14074049 aggacatggtggtagagaagagtacataca--gcgcatttcggaacacaggtttggaagagaagctgaaagagatgggt 14073973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 20721104 - 20721053
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaat 69  Q
    |||||| ||||||||||||||| | ||||||||||||||| | |||||||||    
T  20721104 atgttttgttccacttttggaggaatcaaaattgattctagaggtgtagaat 20721053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 11837508 - 11837472
Alignment:
Q  253 tgagacctttattagaggcttcagggtgttcttctcc 289  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  11837508 tgaggcctttatgagaggcttcagggtgttcttctcc 11837472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 35495156 - 35495216
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    |||||| ||||||||||||||| |  |||||||||||||||| ||||||||| ||||||||    
T  35495156 atgtttggttccacttttggagcacccaaaattgattctacaagtgtagaattgattttga 35495216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 36448010 - 36448070
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    |||||| ||||||||||| ||||| || |||||||||||| |||||||||||  |||||||    
T  36448010 atgtttggttccactttttgagaagtctaaattgattctaaatgtgtagaattcattttga 36448070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 34620782 - 34620842
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    |||||| ||||||||||||||| |  |||||||||||||| | ||||||||| ||||||||    
T  34620782 atgtttcgttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttga 34620842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 34748219 - 34748279
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    |||||| ||||||||||||||| |  |||||||||||||| | ||||||||| ||||||||    
T  34748219 atgtttcgttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttga 34748279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 10400885 - 10400824
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttgat 79  Q
    |||||| |||||||| |||||| || |||||||||||||| | ||||| ||| |||||||||    
T  10400885 atgtttggttccactcttggaggatgcaaaattgattctagaggtgtataattgattttgat 10400824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 29240641 - 29240581
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    |||||| ||||||||||||| | | ||||||||||||||| | ||||| ||| ||||||||    
T  29240641 atgtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaattgattttga 29240581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 15368139 - 15368199
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    |||||| ||||||||||||||| |  |||||||||||||| || |||||||| ||||||||    
T  15368139 atgtttggttccacttttggaggagccaaaattgattctagatatgtagaattgattttga 15368199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 3043186 - 3043133
Alignment:
Q  25 gttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    ||||||||| ||||| | ||||||||||||||| | ||||||||| ||||||||    
T  3043186 gttccacttatggaggaatcaaaattgattctagaggtgtagaattgattttga 3043133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 29922790 - 29922850
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    ||||||| |||||||||| ||| | |||||||||||||||   ||||||||| ||||||||    
T  29922790 atgtttacttccactttttgaggagtcaaaattgattctagtagtgtagaattgattttga 29922850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 3845301 - 3845241
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    |||||| ||||||||||||||| |  |||||||||||||| | ||||||||| ||||||||    
T  3845301 atgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttga 3845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 39256572 - 39256631
Alignment:
Q  19 tgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    ||||| ||||||||||||||||| ||||||||  ||||| | ||||||||| ||||||||    
T  39256572 tgtttggttccacttttggagaaatcaaaattagttctagaggtgtagaattgattttga 39256631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 52925793 - 52925740
Alignment:
Q  25 gttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    ||||||||||||||| | ||||||||||||||| | ||||| ||| ||||||||    
T  52925793 gttccacttttggaggagtcaaaattgattctagaggtgtataattgattttga 52925740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 34867375 - 34867315
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    |||||| |||||||||||  ||||  | |||||||||||||| ||||||||| ||||||||    
T  34867375 atgtttggttccacttttacagaagccgaaattgattctacaggtgtagaattgattttga 34867315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 14302 - 14242
Alignment:
Q  18 atgtttagttccacttttggagaattcaaaattgattctacatgtgtagaatagattttga 78  Q
    |||||| ||||||||||||||  |  ||||||||| |||| ||||||||||| ||||||||    
T  14302 atgtttggttccacttttggaagagccaaaattgaatctagatgtgtagaattgattttga 14242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University