View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15800_low_15 (Length: 238)
Name: NF15800_low_15
Description: NF15800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15800_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 17173718 - 17173498
Alignment:
| Q |
9 |
tcaatggtgatgatggaatggcaagtggatctggtaccacaatgaattatgagtttggatcaaatggaattgagttttttcttgaggttcctcttaatca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17173718 |
tcaatggtgatgatggaatggcaagtggatctggtaccacaatgaattatgagtttggatcatatggaattgagttttttcctgaggttcctcttaatca |
17173619 |
T |
|
| Q |
109 |
agaaattgatctcatggagatgatcaataaaaacccttaagatgggttgggtttattagtaataaagttatcatggatttatgtttggtttatgttatta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17173618 |
agaaattgatctcatggagatgatcaataaaaacccttaagatgggttgggtttattggtaataaagttatcatggatttatgtttggtttatgttatta |
17173519 |
T |
|
| Q |
209 |
tttaacttgtattttgtgatg |
229 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
17173518 |
tttaatttgtattttgtgatg |
17173498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 13644066 - 13644154
Alignment:
| Q |
61 |
gtttggatcaaatggaattgagttttttcttgaggttcctcttaatcaagaaattgatctcatggagatgatcaataaaaacccttaag |
149 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| ||||| || || |||||||| |||||||||| ||| ||| ||||||||||| |
|
|
| T |
13644066 |
gtttggatcaaatggaatggagttttttcctgaaattcctaaaaagcaggaaattgacctcatggagaagatatatagaaacccttaag |
13644154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 13467561 - 13467479
Alignment:
| Q |
9 |
tcaatggtgatgatggaatggcaagtggatctggtaccacaatgaattatgagtttggatcaaatggaattgagttttttcttgag |
94 |
Q |
| |
|
|||| ||||||||||||||| ||||||| | ||| |||||||||||||| ||| ||||| ||||||| |||||||||| |||| |
|
|
| T |
13467561 |
tcaacggtgatgatggaatgacaagtgggtatgg---cacaatgaattatgggttcggatcgtatggaatggagttttttcctgag |
13467479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 34653487 - 34653310
Alignment:
| Q |
9 |
tcaatggtgatgatggaatggcaagtggatctggtaccacaatgaattatgagtttggatcaaatggaattgagttttttcttgaggttcctcttaatca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| || |||||| |||||| || ||||||| |||||||||| |||||||| | || || |
|
|
| T |
34653487 |
tcaatggtgatgatggaatggcaagtggatctggcaccacaacgagttatgattttggaacatatggaatggagttttttcccgaggttccaatgaagca |
34653388 |
T |
|
| Q |
109 |
agaaattgatctcatggagatgatcaataaaaacccttaagatgggttgggtttattagtaataaagttatcatggat |
186 |
Q |
| |
|
||||||||| |||||| |||||| ||| ||| ||||||| | || ||||||| | |||| ||||| |||||||| |
|
|
| T |
34653387 |
ggaaattgatttcatgggtatgatctatagaaatccttaaggcgagtatggtttatgactaatgaagttttcatggat |
34653310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University