View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15800_low_16 (Length: 233)

Name: NF15800_low_16
Description: NF15800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15800_low_16
NF15800_low_16
[»] chr6 (1 HSPs)
chr6 (19-221)||(13777826-13778028)
[»] chr7 (2 HSPs)
chr7 (19-112)||(10289901-10289994)
chr7 (19-112)||(48654945-48655038)
[»] chr1 (1 HSPs)
chr1 (19-112)||(21265311-21265404)
[»] chr2 (2 HSPs)
chr2 (19-112)||(32736018-32736111)
chr2 (34-99)||(35671159-35671223)
[»] scaffold0183 (1 HSPs)
scaffold0183 (114-215)||(15042-15143)
[»] chr8 (1 HSPs)
chr8 (114-202)||(24970552-24970640)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 13777826 - 13778028
Alignment:
Q  19 tgacaaagggaagtgaattcatgcagataattatatggtatggctagtataaattgttggttaattaacaaaactgatgcagtgaaatttgagaaaaaca 118  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13777826 tgacaaagggaagtgaattcatgcagataattatatggtatgactagtataaattgttggttaattaacaaaactgatgcagtgaaatttgagaaaaaaa 13777925  T
Q  119 ttgaaggcttcaaacctcagtcaaagtggaaaggaaagtgggttgatagaaaacctaagcttgattttaatagaagtgatttaacttataaggcttcatc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13777926 ttgaaggcttcaaacctcagtcaaagtggaaaggaaagtgggttgatagaaaacctaagcttgattttaatagaagtgatttaacttataaggcttcaac 13778025  T
Q  219 tca 221  Q
    |||    
T  13778026 tca 13778028  T

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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 10289901 - 10289994
Alignment:
Q  19 tgacaaagggaagtgaattcatgcagataattatatggtatggctagtataaattgttggttaattaacaaaactgatgcagtgaaatttgaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  10289901 tgacaaagggaagtgaattcatgcagataattatatggtatggctagtataaattgttggttaattaccaaaactgatgcaatgaaatttgaga 10289994  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 48654945 - 48655038
Alignment:
Q  19 tgacaaagggaagtgaattcatgcagataattatatggtatggctagtataaattgttggttaattaacaaaactgatgcagtgaaatttgaga 112  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  48654945 tgacaatgggaagtgaattcatgcggataattatatggtatggctagtataaattgttggttaattaacaaaattgatgcaatgaaatttgaga 48655038  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 21265311 - 21265404
Alignment:
Q  19 tgacaaagggaagtgaattcatgcagataattatatggtatggctagtataaattgttggttaattaacaaaactgatgcagtgaaatttgaga 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21265311 tgacaaagggaagtgaattcatgcagatgattatatggtatggctagtataaattgttggttaattaacaaaactgatgcaatgaaatttgaga 21265404  T

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Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 32736018 - 32736111
Alignment:
Q  19 tgacaaagggaagtgaattcatgcagataattatatggtatggctagtataaattgttggttaattaacaaaactgatgcagtgaaatttgaga 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  32736018 tgacaaagggaagtgaattcatgcagataattatatggtatgactagtataaattgttggttaattaacaaaactgatgtaatgaaatttgaga 32736111  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 35671159 - 35671223
Alignment:
Q  34 aattcatgcagataattatatggtatggctagtataaattgttggttaattaacaaaactgatgca 99  Q
    |||||||||||| |||||||||  ||||||||| ||||||||||||||| | ||||||||||||||    
T  35671159 aattcatgcagagaattatatgagatggctagtgtaaattgttggttaaat-acaaaactgatgca 35671223  T

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Target: scaffold0183 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 15143 - 15042
Alignment:
Q  114 aaacattgaaggcttcaaacctcagtcaaagtggaaaggaaagtgggttgatagaaaacctaagcttgattttaatagaagtgatttaacttataaggct 213  Q
    ||||||||||||||||| ||||||||| ||| |||||||||| || ||||||||||| |||||| | || || || | ||| ||||||||||| ||||||    
T  15143 aaacattgaaggcttcagacctcagtcgaagaggaaaggaaaatgagttgatagaaatcctaagttcgacttcaacaaaagcgatttaacttacaaggct 15044  T
Q  214 tc 215  Q
    ||    
T  15043 tc 15042  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 24970640 - 24970552
Alignment:
Q  114 aaacattgaaggcttcaaacctcagtcaaagtggaaaggaaagtgggttgatagaaaacctaagcttgattttaatagaagtgatttaa 202  Q
    |||| ||||| ||||||||||||| || ||| ||||||| |||| ||||||   ||  |||||| ||||||||||||||||||||||||    
T  24970640 aaacgttgaacgcttcaaacctcaatcgaagaggaaagggaagtaggttgaccaaaggcctaagtttgattttaatagaagtgatttaa 24970552  T

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