View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15800_low_2 (Length: 513)
Name: NF15800_low_2
Description: NF15800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15800_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 9835029 - 9834535
Alignment:
| Q |
1 |
cagttgagaatggtgacagggccggtaagcattcccttcattgggcgtttggtcatgctctgagccatagatgaccagaagacggtcattgctttaggac |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9835029 |
cagttgagaatggtgacagggccagtaagcattcccttcattgggcgtttggtcatgctctgagccatggatgaccagaagacggtcattgctttaggac |
9834930 |
T |
|
| Q |
101 |
ggctcacatcaccatagatgattggtggcttcacacagcgagatccataagattgcacccatccattaacagtgaaggcgaagcctgatagctgctcacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |
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| T |
9834929 |
ggctcacatcaccatagatgattggtggcttcacacagcgagatccataagattgcacccatccattaacagtgaaggcaaagcctgacaactgctcacc |
9834830 |
T |
|
| Q |
201 |
aaagtactcaaccatatcatttctctgcaatgaaaagtgaaaacaattagttggaagtacaatcggtaatcgacaacatcagaatgaggtgcaggaaatt |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9834829 |
aaagtactcaaccatgtcatttctctgcaatgaaaagtgaaaacaattagttggaagtacaatcggtaatcgacaacatcagaatgaggcgcaggaaatt |
9834730 |
T |
|
| Q |
301 |
ggacaaggacatgaatatttagtccttaaataaatatgagaactaacctcgggctctccgtgtacaaggacatcgatatcgagcttttcttggagctcaa |
400 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9834729 |
ggacaaggacatgaatatttagtccttaaatgaatatgagaactaacctcaggctctccgtgtacaaggacatcgatatcgagcttttcttggagctcaa |
9834630 |
T |
|
| Q |
401 |
cgacttgacggatttcctctttcattgacttaacatactcttcctccgagaccctgtaaaagaaacaagattatagtcaataaaagaatgaaaaa |
495 |
Q |
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| T |
9834629 |
cgacttgacggatttcctctttcattgacttaacatactcttcctccgagaccctgtaaaagaaacaagattatagtcaataaaagaatgaaaaa |
9834535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 33467204 - 33467432
Alignment:
| Q |
1 |
cagttgagaatggtgacagggccggtaagcattcccttcattgggcgtttggtcatgctctgagccatagatgaccagaagacggtcattgctttaggac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||| | || |||||||||||| |||||||| || || | |
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| T |
33467204 |
cagttgagaatggtgacagggccagtaagcattcccttcattgggcgcttggtaaagctctgagcaagagctgaccagaagacagtcattgcctttgggc |
33467303 |
T |
|
| Q |
101 |
ggctcacatcaccatagatgattggtggcttcacacagcgagatccataagattgcacccatccattaacagtgaaggcgaagcctgatagctgctcacc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||| |||||||||||||| | |||||| || |
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| T |
33467304 |
ggctcacatcaccatagatgattggtggcttgacacaacgagatccataggattgcacccatccattagcagtaaaggcgaagcctgacaactgctcgcc |
33467403 |
T |
|
| Q |
201 |
aaagtactcaaccatatcatttctctgca |
229 |
Q |
| |
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| T |
33467404 |
gaagtactcaaccatatcatttctctgca |
33467432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 456
Target Start/End: Original strand, 33467657 - 33467767
Alignment:
| Q |
346 |
acctcgggctctccgtgtacaaggacatcgatatcgagcttttcttggagctcaacgacttgacggatttcctctttcattgacttaacatactcttcct |
445 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||| |||| |||||| |||||||| ||| ||||||||||| || |||| ||||| |||||||||| |
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| T |
33467657 |
acctcgggctctccgtgtactaggacatcaatatcaagctcttcttgaagctcaacaactgagcggatttcctccttaattgccttaatgtactcttcct |
33467756 |
T |
|
| Q |
446 |
ccgagaccctg |
456 |
Q |
| |
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| |||| |||| |
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|
| T |
33467757 |
cggagatcctg |
33467767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 35947876 - 35947650
Alignment:
| Q |
1 |
cagttgagaatggtgacagggccggtaagcattcccttcattgggcgtttggtcatgctctgagccatagatgaccagaagacggtcattgctttaggac |
100 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||||||||| |||||||||| || ||||| | || ||||||||||| ||||||| || |||| |
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| T |
35947876 |
cagtttagaattgtaacagggccggtaagcattcccttcattggccgtttggtcaaactttgagctgttgaagaccagaagacagtcattggcttgggac |
35947777 |
T |
|
| Q |
101 |
ggctcacatcaccatagatgattggtggcttcacacagcgagatccataagattgcacccatccattaacagtgaaggcgaagcctgatagctgctcacc |
200 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||| || || ||||||| | ||||| |||| || || || |
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| T |
35947776 |
ggctcacatcaccatagatgattggtggtttgacacagcgggatccgtaggattgcacccacccgttggcagtgaaagtaaagccagataattgttctcc |
35947677 |
T |
|
| Q |
201 |
aaagtactcaaccatatcatttctctg |
227 |
Q |
| |
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||| ||||||||||| ||||| ||||| |
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|
| T |
35947676 |
aaaatactcaaccatgtcattcctctg |
35947650 |
T |
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