View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15800_low_3 (Length: 448)
Name: NF15800_low_3
Description: NF15800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15800_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36947380 - 36947600
Alignment:
| Q |
1 |
ctgaaaattaactccatacattagttccaaaccatttatgcgcattgccaataaatgtgaaagcttacattttattatttctgagcgagaagtcatatgt |
100 |
Q |
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| T |
36947380 |
ctgaaaattaactccgtacattagttccaaaccatttatgcgcattgccaataaatgtgaaagcttacattttattatttctgagggagaagtcatatgt |
36947479 |
T |
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| Q |
101 |
agcagctgaggagttgacccgccctcggaagaagaatgcataatagcaactactgccaccttgtattgcaaaaattttaaagcgatgtcttctagtctct |
200 |
Q |
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| T |
36947480 |
agcagctgaggagttgacccgccctcggaagaagaatgcataatagcaactactgccaccttgtattgcaaaaattttaaaacgatgtcttctagtctct |
36947579 |
T |
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| Q |
201 |
cagagggcctagcctgcagat |
221 |
Q |
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| T |
36947580 |
cagagggcctagcctgcagat |
36947600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 275 - 434
Target Start/End: Original strand, 36947654 - 36947813
Alignment:
| Q |
275 |
tttctacgcgaaattgggaaattgatttgatacgcaaaaaatttcgcacaagtgttaaagagcttacatcaacaaaactcgaaggatatgttttcccatt |
374 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36947654 |
tttctacgcaaaattgggaaattgatttgatgagcaaaaaatttctaacaagtgttgaggagcttacatcaacaaaactccaaggatatgttttcccatt |
36947753 |
T |
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| Q |
375 |
actatcagttccacattgctgtaattttctctctatgcatgctgctaaagtatgtgtctc |
434 |
Q |
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| T |
36947754 |
actatcagttccacattgctgtaattttctctctatgcatgctgctaaagtatgtgtctc |
36947813 |
T |
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