View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15800_low_6 (Length: 381)
Name: NF15800_low_6
Description: NF15800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15800_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 14917928 - 14918275
Alignment:
| Q |
18 |
aacttttggttgatttctataatagttctgggcagagaaaaccagccaatatcatcattttcaggttaatttactttcccaattttctaccattcatttt |
117 |
Q |
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| T |
14917928 |
aacttttggttgatttctataatagttctgggcaaagaaaaccagccaatatcatcattttcaggttaatttactttcccaattttctatcattcatttt |
14918027 |
T |
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| Q |
118 |
cttctacctgttagttgcaatcatttttatgatacttttctattttcataccaaatataattaatgttattgtagttggtttattgctactagtgtggtt |
217 |
Q |
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| T |
14918028 |
cttctacctgtt----gcaatcatttttatgatactttactattttcataccaa-tataattaatgttattatagttggtttattgctactagtgtggtt |
14918122 |
T |
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| Q |
218 |
ttgatggtctgaactgtgtttctctttgctgatgaatgtagggatggtgttagtgagtctcagttcaaccaagttttgaacgtcgaactcggccaaatca |
317 |
Q |
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| T |
14918123 |
ttgatggtctgaactgtgtttctctttgctgatgaatgtagggatggtgttagtgagtctcagttcaaccaagttttgaacgtcgaactcggccaaatca |
14918222 |
T |
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| Q |
318 |
tcgaggttcttaacttcatcaaatttgcattaaatatacgatttgttttatat |
370 |
Q |
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| T |
14918223 |
tcgaggttcttaacttcatcaaatttgcattaaatatacgatttgttttatat |
14918275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 38125742 - 38125932
Alignment:
| Q |
18 |
aacttttggttgatttctataatagttctgggcagagaaaaccagccaatatcatcattttcaggttaatttactttcccaattttctaccattcatttt |
117 |
Q |
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| T |
38125742 |
aacttttgcttgatttctttcatagttctgaagagagacgaccagagaatataatcattttcaggtt----tactttcctaattttctaccat-catttt |
38125836 |
T |
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| Q |
118 |
cttctacctgttagttgcaatcatttttatgatacttttctattttcataccaaatataattaatgttattgtagttggtttattgctactagtgtg |
214 |
Q |
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| T |
38125837 |
cttctacttgctagttgcaattatttttatgatacttttttgttttcatacc-aatataattgatgttattgtaattggtttattgctactagtgtg |
38125932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 38125955 - 38126056
Alignment:
| Q |
254 |
tgtagggatggtgttagtgagtctcagttcaaccaagttttgaacgtcgaactcggccaaatcatcgaggttcttaacttcatcaaatttgcattaaata |
353 |
Q |
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| T |
38125955 |
tgtagggatggtgttagtgagtctcagttcaacgaagtgttgaacgttgaactcagccaaatcatcgaggttcttaaattgaacaaatttgcattaaata |
38126054 |
T |
|
| Q |
354 |
ta |
355 |
Q |
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|| |
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| T |
38126055 |
ta |
38126056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 38117821 - 38117904
Alignment:
| Q |
242 |
tttgctgatgaatgtagggatggtgttagtgagtctcagttcaaccaagttttgaacgtcgaactcggccaaatcatcgaggtt |
325 |
Q |
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| T |
38117821 |
tttgctgattgatgtagggatggtgtcagcgagtctcagttcaaccaagttttgaacattgaactgagccaaatcattgaggtt |
38117904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 38117602 - 38117703
Alignment:
| Q |
20 |
cttttggttgatttctataatagttctgggcagagaaaaccagccaatatcatcattttcaggttaatttactttcccaattttctaccattcattttct |
119 |
Q |
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| T |
38117602 |
cttttgattgatttttataatagttctgggaacagaaaaccagacaatatcataattttcaggtaatctttcgtttccatttttttaccattcgttttct |
38117701 |
T |
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| Q |
120 |
tc |
121 |
Q |
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|| |
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| T |
38117702 |
tc |
38117703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 35468672 - 35468742
Alignment:
| Q |
256 |
tagggatggtgttagtgagtctcagttcaaccaagttttgaacgtcgaactcggccaaatcatcgaggttc |
326 |
Q |
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| T |
35468672 |
tagggatggtgttagtgagtcacaattcaatcaagttttgaatattgaactcgaccagatcattgaggttc |
35468742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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