View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15800_low_8 (Length: 327)
Name: NF15800_low_8
Description: NF15800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15800_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 39562369 - 39562061
Alignment:
| Q |
1 |
tatattactgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataatagttaatgtacattatcacaactagtgagtttaattagataaga |
100 |
Q |
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| T |
39562369 |
tatattactgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaattagataaga |
39562270 |
T |
|
| Q |
101 |
atgccaactgagggttctagttttattcatggctgccaattgaggccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgttactt |
200 |
Q |
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| T |
39562269 |
atgccaactgagggttctagttttattgatggctgccaattgaggccagcattcaagaactttagtcagtacaaaaaccttgcttattctaatgttactt |
39562170 |
T |
|
| Q |
201 |
ttggggtcccagttacggattgcattaagataccgtggattcataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgag |
300 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39562169 |
ttggggtcccagttatggattgcattaagatactgtggattcataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgag |
39562070 |
T |
|
| Q |
301 |
attctaaag |
309 |
Q |
| |
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||||||||| |
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| T |
39562069 |
attctaaag |
39562061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 39567038 - 39566740
Alignment:
| Q |
9 |
tgtaagcttgatgagtggtaggaaaattttgca-atgttttctaataatagttaatgtacattatcacaacta-gtgagtttaattagataagaatgcca |
106 |
Q |
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| T |
39567038 |
tgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaa--ataat-aatgtacattattacaactaagtgagtttaatcagataaaaatgcca |
39566942 |
T |
|
| Q |
107 |
actgagggttctagttttattcatggctgccaattgaggccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgttacttttgggg |
206 |
Q |
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| T |
39566941 |
actgagg-ttctagctttattgatggctgtcaattgataccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgttacttttgggg |
39566843 |
T |
|
| Q |
207 |
tcccagttacggattgcattaagataccgtggattcataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgagattcta |
306 |
Q |
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| T |
39566842 |
tcccagttatggattgcattaagatactgtggattcataacccaataccatatcagaataacaagagccaaattggaaaatctagcctttcgagattcta |
39566743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 26 - 308
Target Start/End: Complemental strand, 39572532 - 39572252
Alignment:
| Q |
26 |
gtaggaaaattttgcaatgttttctaataatagttaatgtacattatcacaactagtgagtttaattagataagaatgccaactgagggttctagtttta |
125 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39572532 |
gtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaattagataagaatgccaactgagggttctagtttta |
39572433 |
T |
|
| Q |
126 |
ttcatggctgccaattgaggccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgttacttttggggtcccagttacggattgcat |
225 |
Q |
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| T |
39572432 |
ttgatgg-tgt-agtggaagccagcattcaagggttttagttagtacaaaaaccttggttattctaatattacttttggtgtcccagttatggattgcat |
39572335 |
T |
|
| Q |
226 |
taagataccgtggattcataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgagattctaaa |
308 |
Q |
| |
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|||||||| |||||||||||| ||||||||| ||||||||||||| || ||||||||||||| |||||||| |||||||||| |
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| T |
39572334 |
taagatactgtggattcataacccaataccaaatcagactaacaataggaaaattggaaaatctagcctttcaagattctaaa |
39572252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 39580986 - 39581026
Alignment:
| Q |
268 |
caagagccaaattggaaaatccagcctttcgagattctaaa |
308 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||||||||| |
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| T |
39580986 |
caagagcaaaattgtaaaatctagcctttcgagattctaaa |
39581026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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