View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15801_high_5 (Length: 331)
Name: NF15801_high_5
Description: NF15801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15801_high_5 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 54967494 - 54967210
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54967494 |
gttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
54967395 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| | ||||| |
|
|
| T |
54967394 |
ttcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctcttt |
54967295 |
T |
|
| Q |
199 |
atgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
54967294 |
gtgtcattacgcttttatttcacgtttccgctagtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaaca |
54967210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 44782808 - 44782524
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44782808 |
gttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttgcaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
44782709 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggttttt-ccctttctcacactgagaaggttttccacgctaaaactttctt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||| | |||| |
|
|
| T |
44782708 |
ttcccattatcattatagtggaagtttt-aagaggtccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt |
44782610 |
T |
|
| Q |
198 |
tatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44782609 |
tgtgtcattacgtttatatttcacgtttccgctagtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
44782524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 54980126 - 54979854
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54980126 |
gttttcttgtgagagaaatagcgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
54980027 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||| | ||||| |
|
|
| T |
54980026 |
ttcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaattctcttt |
54979927 |
T |
|
| Q |
199 |
atgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcagg |
271 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
54979926 |
gtgtcattacacttttatttcacgtttccgctagtgcttattttgagttgacggaggagggaaattatgcagg |
54979854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 39298725 - 39299002
Alignment:
| Q |
7 |
ttgtgagagaaatagtgagccaatttgtgagtgt-tccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
39298725 |
ttgtgagagaaatagtgagccaatttgtgagagtgtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctt |
39298824 |
T |
|
| Q |
106 |
tatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttctttatgtcat |
205 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| |||||||| ||||| |||| ||||| |||||||||||| ||| |||||| | |||| |||||| |
|
|
| T |
39298825 |
tatcattatagtggaag--tttaagaggcacaagggtcccgtgattttt-ccttcatcacattgagaaggtttttcacactaaaattatcttcgtgtcat |
39298921 |
T |
|
| Q |
206 |
tacatttatatttcacgtttccgctagtgc-ctattttgagttcacggagaagggaaattat-gcaggcatttcccaacaa |
284 |
Q |
| |
|
|||| |||||||||||||||| |||| ||| ||||||| |||||| | || ||||||||||| | || ||||||||||||| |
|
|
| T |
39298922 |
tacacttatatttcacgtttctgctaatgcgctattttaagttcatgaaggagggaaattatggaagtcatttcccaacaa |
39299002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 62 - 283
Target Start/End: Complemental strand, 18556523 - 18556305
Alignment:
| Q |
62 |
attgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttcccttt |
160 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| | || ||||||||| ||||| ||||| |
|
|
| T |
18556523 |
attgtaatgagatccacctaagggtgaagttgttgtattctcattgtcattatagtggaag--tttaagaggctcgagggtcccgtggttttttgccttt |
18556426 |
T |
|
| Q |
161 |
ctcacactgagaaggttttccacgctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaaggga |
260 |
Q |
| |
|
|||| | ||||||||||||||||||||||| || | | ||||||||| |||||||||||||||| ||| || ||||||||||||||| |||| ||| | |
|
|
| T |
18556425 |
ctcagattgagaaggttttccacgctaaaa--ttttatgtgtcattacgcttatatttcacgtttctgctggtacctattttgagttcatggaggaggca |
18556328 |
T |
|
| Q |
261 |
aattatgcaggcatttcccaaca |
283 |
Q |
| |
|
||||||| ||| |||||||||| |
|
|
| T |
18556327 |
aattatgtaggtgtttcccaaca |
18556305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 17645710 - 17645982
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgt--gagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| |
|
|
| T |
17645710 |
gtttccttgtgagataaatagtgagccaatttgtaagagtgttccttacaaattgagagatacgttgtagtgagatccacctaggg-----gttgttgta |
17645804 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttcttt |
198 |
Q |
| |
|
|| |||||||||||||||||||| ||||||| || ||||||||||||||||||| ||| | | | ||||||||||||||||||||||| ||| |
|
|
| T |
17645805 |
ttgtcattatcattatagtggaag--tttaagacgctcaagagtcccgtggttttt---ttttttatattgagaaggttttccacgctaaaa----tttt |
17645895 |
T |
|
| Q |
199 |
atgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcagg-catttcccaacaa |
284 |
Q |
| |
|
||| |||||| ||||| || | ||| | |||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
17645896 |
gtgtgattacacttataatttatgttcctactagtgtctattttgagttcacggatgagggaaattatggaggtcatttcccaacaa |
17645982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 50603225 - 50603318
Alignment:
| Q |
94 |
ttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaa |
190 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| |||||||| | | || ||||||||||| | || |||||| ||||||||||||||||||||||| |
|
|
| T |
50603225 |
ttgtattcccattattattatagtggagattt--aagaggcctacgggttccgtggttttttc-ttactcacattgagaaggttttccacgctaaaa |
50603318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 50603351 - 50603404
Alignment:
| Q |
231 |
agtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaacaa |
284 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||| | | ||||||||||||||| |
|
|
| T |
50603351 |
agtgtctattttgagttcacggaggagagaaattgtactggcatttcccaacaa |
50603404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 31725242 - 31725198
Alignment:
| Q |
239 |
ttttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
31725242 |
ttttgaattcacggagaaggtgaattatgcagacatttcccaaca |
31725198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 41481531 - 41481817
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41481531 |
gttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
41481630 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttt-tccctttctcacactgagaaggttttccacgctaaaactttctt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||||||||||| | |||| |
|
|
| T |
41481631 |
ttcccattatcattatagtggaagtttt-aagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt |
41481729 |
T |
|
| Q |
198 |
tatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaacaag |
285 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41481730 |
tgtgtcattacgtttatatttcacgtttccgctagtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaacaag |
41481817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 36167530 - 36167813
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36167530 |
gttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgta |
36167629 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctcacactgagaaggttttccacgctaaaactttctt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| || |||||| ||||||||||||||| | ||||||||||||||||||||||| | |||| |
|
|
| T |
36167630 |
ttcccattatcattatagtggaagtttt-aagaggcccaagggt-ccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt |
36167727 |
T |
|
| Q |
198 |
tatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36167728 |
tgtgtcattacgtttatatttcacgtttccgctagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
36167813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 18951404 - 18951129
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
18951404 |
gttttctcttgagggaaataatgagccaatttgtgagagtgttccttacaaattgagagataaattatagtgagatcaacctaagggtgaagttgttgta |
18951305 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctcacactgagaaggttttccacgctaaaactttctt |
197 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||||| ||||||||||||||| ||||||| ||| |
|
|
| T |
18951304 |
ttcccattatcattatagtggaag-ttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggttttccatgctaaaa--ttc-- |
18951210 |
T |
|
| Q |
198 |
tatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcc |
278 |
Q |
| |
|
| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
18951209 |
tgtgtcattacgcttatatttcatgtttccgctagtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc |
18951129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 2652 - 2936
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgagtg--ttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2652 |
gttttcttgtgagagaaatagtgagccaatttgtgagagcgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
2751 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttt-tccctttctcacactgagaaggttttccacgctaaaactttctt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| | |||| |
|
|
| T |
2752 |
ttcccattatcattatagtggaagtttt-aagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctt |
2850 |
T |
|
| Q |
198 |
tatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2851 |
tgtgtcattacgcttatatttcacgtttccgctagtgtctattttgagttcacggagaagggaaattatgcatgcatttcccaaca |
2936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 9757497 - 9757212
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9757497 |
gttttcttttgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgta |
9757398 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagttttt-aagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttctt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| |
|
|
| T |
9757397 |
ttcccattatcattatagtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctt |
9757298 |
T |
|
| Q |
198 |
tatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
9757297 |
tgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaaca |
9757212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 42683115 - 42682854
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgt--gagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42683115 |
gttttcttgtgagagaaatagtgagccaatttgtaagagtgttccttacaaattgagagatatattgtagtgagatgcacctaagggtgaagttgttgta |
42683016 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttcttt |
198 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||| ||| | | |
|
|
| T |
42683015 |
ttcccattatcattatagtggaag-ttttaagaggtccaagggtcccgtgattttt-cctttctcacattgagaaggttttccacgctgaaa----ttat |
42682922 |
T |
|
| Q |
199 |
atgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattat |
266 |
Q |
| |
|
||||||||| ||||||||| |||||| |||||||| ||||||||||||||||| | | ||||||||| |
|
|
| T |
42682921 |
gtgtcattacgtttatattttacgttttcgctagtgtctattttgagttcacgggggaaggaaattat |
42682854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 37287156 - 37286912
Alignment:
| Q |
10 |
tgagagaaatagtgagccaatttgtg--agtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaa-gttgttgtattcccatt |
106 |
Q |
| |
|
||||||||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| ||| |
|
|
| T |
37287156 |
tgagagaaacagtgagccgatttgtgttaatgttccttacaaattgagagatatattgtagtgagctccatctaagggtgaaagttgttgtattcttatt |
37287057 |
T |
|
| Q |
107 |
atcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttctttatgtcatt |
206 |
Q |
| |
|
|| |||||||||||||||| |||| || ||| |||||||| ||||||| ||| ||||| ||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
37287056 |
attattatagtggaagttt--aagatgcttaagggtcccgtgatttttcctttt-tcacattgagaaggttttccatgctaaaattttctttctgtcatt |
37286960 |
T |
|
| Q |
207 |
acatttatatttcacgtttccgctagtgcctattttgagttcacggag |
254 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
37286959 |
acgtttatatttcacgtttccgctagtgtttattttgagctcacggag |
37286912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 25002947 - 25002905
Alignment:
| Q |
239 |
ttttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
25002947 |
ttttgagttcacggag-agggaaattatgca-gcatttcccaaca |
25002905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 4842932 - 4842648
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842932 |
gttttcttgtgagagaaatattgagccaatttgtgagagtgttccttaaaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
4842833 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggttttt-ccctttctcacactgagaaggttttccacgctaaaactttctt |
197 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||||||| | |||| |
|
|
| T |
4842832 |
ttcctattatcattatagtggaagtttt-aagaggcccaagggtcctgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctt |
4842734 |
T |
|
| Q |
198 |
tatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4842733 |
tgtgtcattacacttatatttcacgtttccgctagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
4842648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 4835857 - 4835575
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4835857 |
gttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgca |
4835758 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctcacactgagaaggttttccacgctaaaactttctt |
197 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
4835757 |
ttcccattatcattatagtggaag-ttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaa--ttctc |
4835661 |
T |
|
| Q |
198 |
tatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
| ||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
4835660 |
tgtgtcattacgtttatatttcacgtttccactagtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaaca |
4835575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 25857412 - 25857131
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25857412 |
gttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgta |
25857313 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttcttt |
198 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| | |
|
|
| T |
25857312 |
ttcccattatcattatagtggaag-ttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaa--ttctct |
25857216 |
T |
|
| Q |
199 |
atgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25857215 |
gtgtcattacgcttatatttcacgtttccgctagtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaaca |
25857131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 24379562 - 24379279
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24379562 |
gttttcttgtgaaagaaatagtgagccaatttatgagagtgttccttacaaattgagagatatattgtagggagatccacctaagggtgaagttgttgta |
24379463 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttcttt |
198 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| | |
|
|
| T |
24379462 |
ttcctattatcattatagtggaagtttt-aagaggcccaaagatcccgtggtttttccctttctcacattgagaaggttttccacgttaaaattatctct |
24379364 |
T |
|
| Q |
199 |
atgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||| || ||||| |||||| |
|
|
| T |
24379363 |
atgtcattacgtttatattttacgtttccactagtgcctattttaagttcacggaggagagaaattatgtagacattttccaaca |
24379279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 13465238 - 13465050
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgt--gagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
13465238 |
gttttcttgtgaga--aatagtgaaccaatttgtaagagtgttccttacaaattgagagatacattgtagtgagatccacctgagggtgaacttgttgta |
13465141 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaa |
190 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13465140 |
ttcccattatcattatagtggatg-ttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaaggttttccacgctaaaa |
13465050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 27341207 - 27340935
Alignment:
| Q |
7 |
ttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattccca |
104 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||| ||| |
|
|
| T |
27341207 |
ttgtgagagaaatagtgagccaacctgtgagagtgttccttacaaattgagagatatattgtagtgagatccatctaa--gagaagttattgtatttcca |
27341110 |
T |
|
| Q |
105 |
ttatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttctttatgtca |
204 |
Q |
| |
|
|||||||| |||| |||| ||||||||| |||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||| | ||||| |
|
|
| T |
27341109 |
ttatcattgtagtagaag--tttaagaggtacaagggtcccgtggttttt-cctttcttacattgagaaggttttccacgctaaaa--ttctctgtgtca |
27341015 |
T |
|
| Q |
205 |
ttacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcagg-catttcccaaca |
283 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||| | |||||||||||| ||| ||||||||||| |
|
|
| T |
27341014 |
ttacgcttatatttcatgtttccgctagtgcctattttgagttcacaaaagagggaaattatggaggttatttcccaaca |
27340935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 4603593 - 4603755
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4603593 |
gttttcttgtgagagaaatagagagccaatttgtaagtgttccttacaaattgaaagatatattgtagtgagatccacctaagggtaaagttgttgtatt |
4603692 |
T |
|
| Q |
101 |
cccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctc |
163 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
4603693 |
tccattatcattatagtggaag-gtttaagaggcccaaaggtcccgtggttttttccctttctc |
4603755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 17845766 - 17846052
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaattt------gtgagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgt |
94 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17845766 |
gtttccttgtgagagaaatattgagtcaatttaattatgagagtgttccttacaaattgagagatatattgtagtgagattcacctaagggtgaagttgt |
17845865 |
T |
|
| Q |
95 |
tgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaacttt |
194 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||| |||| |||| ||||||||| |||| |||||| || ||||||||||||| |||||| | | |
|
|
| T |
17845866 |
tgtatttccattatcattatagtggaag--tttaagaggtccaaaggtcctgtggttttt-ccttcctcacattgggaaggttttccactctaaaattct |
17845962 |
T |
|
| Q |
195 |
ctttatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattat-gcaggcatttcccaacaa |
284 |
Q |
| |
|
| || |||| |||| ||||||||||| |||| ||| |||| ||||| ||||||||||| ||| ||||||| | || ||||||||||||| |
|
|
| T |
17845963 |
c-ttgtgtctttacgcttatatttcacatttctcctaatgccaattttaagttcacggaggaggaaaattatggaagtcatttcccaacaa |
17846052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 38994317 - 38994059
Alignment:
| Q |
6 |
cttgtgagagaaatagtgagccaatttgtga--gtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattccc |
103 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38994317 |
cttgtgagagaaataatgagccaatttgtgatagtgttccttacaaattgagagatatattgtagtgagatccacctaagg------------------- |
38994237 |
T |
|
| Q |
104 |
attatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttctttatgtc |
203 |
Q |
| |
|
|||||||||| || ||||||| ||||||| | || ||||||||||||||||||||||| || ||||||||||||||||| ||||| | ||||| |||| |
|
|
| T |
38994236 |
--tatcattataatgaaagtttt-aagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaattctctttgtgtc |
38994140 |
T |
|
| Q |
204 |
attacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaacaa |
284 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||||| |||||| ||| | ||||||||||| | |||||||||||| |
|
|
| T |
38994139 |
attacatttatatttcatgtttccgtcggtgtctattttaagttcatggatgatagaaattatgcatgtatttcccaacaa |
38994059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 10974926 - 10974974
Alignment:
| Q |
283 |
aagtgcaagggacttgactactcctgattgtatgcgaaacaagtataat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10974926 |
aagtgcaagggacttgactactcctgattatatgcgaaacaagtataat |
10974974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 24380113 - 24380164
Alignment:
| Q |
233 |
tgcctattttgagttcacggagaagggaaattatgcaggcatttcccaacaa |
284 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
24380113 |
tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaacaa |
24380164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 342499 - 342217
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |
|
|
| T |
342499 |
gttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtcagatacacctaagggtgaaattgttgta |
342400 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggttt-ttccctttctcacactgagaaggttttccacgctaaaactttctt |
197 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||||||| | |||||||||||| |||||||||| ||||| |
|
|
| T |
342399 |
ttcccattatcattatagtggaag-ttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaa--ttctt |
342303 |
T |
|
| Q |
198 |
tatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaaca |
283 |
Q |
| |
|
| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
342302 |
tgtgtcattacgcttatatttcacgtttctgctagtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca |
342217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 64 - 284
Target Start/End: Original strand, 22981494 - 22981711
Alignment:
| Q |
64 |
tgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctc |
163 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22981494 |
tgtagtgaaatccacctaagggtgaagttgttgtattcccattatcattatagtggaag-ttttaagaggcccaagggtcccgtggtttttccctttctc |
22981592 |
T |
|
| Q |
164 |
acactgagaaggttttccacgctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaat |
263 |
Q |
| |
|
||| ||||||||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
22981593 |
acattgagaaggttttccacgctaaaa--ttctctgtgtcattacgcttatttttcacgtttccgctagtgcctgttttgagttcacggaggggggaaat |
22981690 |
T |
|
| Q |
264 |
tatgcaggcatttcccaacaa |
284 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
22981691 |
tatgcagtcatttcccaacaa |
22981711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 64 - 284
Target Start/End: Complemental strand, 23806914 - 23806697
Alignment:
| Q |
64 |
tgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctc |
163 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23806914 |
tgtagtgaaatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttt-aagaggcccaagggtcccgtggtttttccctttctc |
23806816 |
T |
|
| Q |
164 |
acactgagaaggttttccacgctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaat |
263 |
Q |
| |
|
||| ||||||||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
23806815 |
acattgagaaggttttccacgctaaaa--ttctctgtgtcattacgcttatttttcacgtttccgctagtgcctgttttgagttcacggaggggggaaat |
23806718 |
T |
|
| Q |
264 |
tatgcaggcatttcccaacaa |
284 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
23806717 |
tatgcagtcatttcccaacaa |
23806697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 284
Target Start/End: Complemental strand, 31152133 - 31151925
Alignment:
| Q |
65 |
gtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctca |
164 |
Q |
| |
|
||||| || |||| || ||||||||| | ||||||||||||||| ||||||||||| ||| |||||||| | | ||||||||||||| ||| |||| |
|
|
| T |
31152133 |
gtagttaggtccatctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcctacggatcccgtggtttttttcttactca |
31152037 |
T |
|
| Q |
165 |
cactgagaaggttttccacgctaaaactttctt-tatgtcattacatttatatttcacgtttccgcta--gtgcctattttgagttcacggagaagggaa |
261 |
Q |
| |
|
|| |||||||||||||||| ||||| ||| || | ||||||| |||| |||||||||| |||||||||||||||||| ||| |||||| |
|
|
| T |
31152036 |
cattgagaaggttttccacattaaaattttgttgtgtgtcatt----ttat-------gtttccgctaaagtgcctattttgagttcagagaggagggaa |
31151948 |
T |
|
| Q |
262 |
attatgcaggcatttcccaacaa |
284 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31151947 |
attatgcaggcatttcccaacaa |
31151925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 37037847 - 37038112
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| | |||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
37037847 |
gttttcttgtgagagaaatagtgagccaatttgtgagagtgtttcttataaattgagagtcagattgtaatgagatccacctaagagtgaagttgttgta |
37037946 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttcttt |
198 |
Q |
| |
|
||| ||||||| |||||||| ||| ||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||| |||||||| ||| | |
|
|
| T |
37037947 |
ttctcattatcgttatagtgaaag--tttaagaggcccaagggtcccgtggtttct-cctttctcacattgagaaggttttcctcgctaaaa--atctat |
37038041 |
T |
|
| Q |
199 |
atgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattatgca |
269 |
Q |
| |
|
|||| |||| | |||||| |||| |||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
37038042 |
gtgtctttacgcaaagatttcaggttttcgctagtgcctattttgagttcacggaggagagaaattatgca |
37038112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 67 - 285
Target Start/End: Complemental strand, 22764029 - 22763812
Alignment:
| Q |
67 |
agtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcaca |
166 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
22764029 |
agtgagattcacctaagagtgaagttgttgtattcccattatcattatagcataagtttt-aagaggcccaatggtcccgtggtttttccctttctcata |
22763931 |
T |
|
| Q |
167 |
ctgagaaggttttccacgctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcctattttgagttcacggagaagggaaattat |
266 |
Q |
| |
|
||||||||||||||| ||||||| | ||||| | ||||||| |||||||||||||||| ||||||||||||||| | ||| | ||| | | ||||||| |
|
|
| T |
22763930 |
ttgagaaggttttccatgctaaaattctctttgtatcattacgcttatatttcacgtttctgctagtgcctattttaaattctccgaggaagaaaattat |
22763831 |
T |
|
| Q |
267 |
gcaggcatttcccaacaag |
285 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
22763830 |
gctgacatttcccaacaag |
22763812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 16698412 - 16698599
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||||||||| ||||||||| || |||||| ||||| |||| |||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
16698412 |
gttttcttgtgggagaaatagggacccaattcgtgagagtgtttcttacaaattgagagatacattgtagtgagatccacataagggtgaa---gttgta |
16698508 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaa |
190 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||| ||||| | ||||||||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
16698509 |
ttcccattatcattatagtggaag-ttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaa |
16698599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 283
Target Start/End: Original strand, 33808018 - 33808213
Alignment:
| Q |
74 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaa |
173 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| ||| |||||||| | | |||||||||||||||| || |||||| |||||| |
|
|
| T |
33808018 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcctacgggtcccgtggtttttcc-ttactcacattgagaa |
33808113 |
T |
|
| Q |
174 |
ggttttccacgctaaaactttctttatgtcattacatttatatttcacgtttccgcta--gtgcctattttgagttcacggagaagggaaattatgcagg |
271 |
Q |
| |
|
||||||||||||||||| ||| || ||||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33808114 |
ggttttccacgctaaaattttgttg-tgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcagg |
33808201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 283
Target Start/End: Original strand, 33811672 - 33811867
Alignment:
| Q |
74 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaa |
173 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| ||| |||||||| | | |||||||||||||||| || |||||| |||||| |
|
|
| T |
33811672 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcctacgggtcccgtggtttttcc-ttactcacattgagaa |
33811767 |
T |
|
| Q |
174 |
ggttttccacgctaaaactttctttatgtcattacatttatatttcacgtttccgcta--gtgcctattttgagttcacggagaagggaaattatgcagg |
271 |
Q |
| |
|
||||||||||||||||| ||| || ||||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33811768 |
ggttttccacgctaaaattttgttg-tgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcagg |
33811855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 283
Target Start/End: Original strand, 33816590 - 33816785
Alignment:
| Q |
74 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaa |
173 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| ||| |||||||| | | |||||||||||||||| || |||||| |||||| |
|
|
| T |
33816590 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcctacgggtcccgtggtttttcc-ttactcacattgagaa |
33816685 |
T |
|
| Q |
174 |
ggttttccacgctaaaactttctttatgtcattacatttatatttcacgtttccgcta--gtgcctattttgagttcacggagaagggaaattatgcagg |
271 |
Q |
| |
|
||||||||||||||||| ||| || ||||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33816686 |
ggttttccacgctaaaattttgttg-tgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcagg |
33816773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 16698609 - 16698671
Alignment:
| Q |
222 |
gtttccgctagtgcctattttgagttcacggagaagggaaattatgcaggcatttcccaacaa |
284 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
16698609 |
gtttccgctagtgcctattctgagttcacggaggatggaaattatgcatatatttcccaacaa |
16698671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 26768 - 26581
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
26768 |
gtttttttgtgaga-aaatagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgta |
26670 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaa |
190 |
Q |
| |
|
||| | ||||||||| |||||||| ||||||||||||||| ||||||| |||||| |||| |||||| ||| |||||||||||| |||||| |
|
|
| T |
26669 |
ttctcgttatcattagagtggaag--tttaagaggcccaagggtcccgtagttttt-ccttactcacattgaaaaggttttccaccctaaaa |
26581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27642034 - 27642261
Alignment:
| Q |
1 |
gttttcttgtgagagaaatagtgagccaatttgtgag--tgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgta |
98 |
Q |
| |
|
|||| ||| |||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| | |||||||||| || |
|
|
| T |
27642034 |
gtttccttttgagagaaataggaagtcaatttgtgagagtgttccttacaaatagagagatatattgtagtgagatccacttaaagatgaagttgtttta |
27642133 |
T |
|
| Q |
99 |
ttcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttcttt |
198 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| ||| || |||||| ||||| ||||||||||| |||||||||||| ||||| |||| ||| || |
|
|
| T |
27642134 |
ttcccattattattatagtggaag--tttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaa--ttcctt |
27642229 |
T |
|
| Q |
199 |
atgtcattacatttatatttcacgtttccgct |
230 |
Q |
| |
|
| ||||||| |||||||||||||||||||| |
|
|
| T |
27642230 |
gtatcattacgcttatatttcacgtttccgct |
27642261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University