View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15801_high_6 (Length: 293)
Name: NF15801_high_6
Description: NF15801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15801_high_6 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 33 - 287
Target Start/End: Complemental strand, 12735413 - 12735159
Alignment:
| Q |
33 |
aatggattgatatgtttgcgcggtgcttcttggaatgccgcctctacctacaaagacatgtggttccgtctctggaacccagccacaaatacattatctg |
132 |
Q |
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| T |
12735413 |
aatggattgatatgtttgtccggtgcttctaggaatgctgccgctaactacaaagacacgtggttccgtctctggaacccagccacaaatacattatctg |
12735314 |
T |
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| Q |
133 |
aaaaattcgggtattcagctaacctttttcggtatacatttggctatgatatttcaaatgatggttataaggtggttgccttctcgtcagaacaggacga |
232 |
Q |
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| T |
12735313 |
aaaaattcgggtattcaactaacctttttcggtatacatttggctatgatatttcaaatgatggttataaggtggttgccttctcgtcagaacaggacga |
12735214 |
T |
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| Q |
233 |
gaaggtaaaagttttctgcttgactgataatgtttggagagatattcctactttt |
287 |
Q |
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| T |
12735213 |
aaaggtaaaagttttctgcttgactgataatgtttggagagatattcctcctttt |
12735159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 25 - 287
Target Start/End: Original strand, 7509 - 7771
Alignment:
| Q |
25 |
gttcctgtaatggattgatatgtttgcgcggtgcttcttggaatgccgcctctacctacaaagacatgtggttccgtctctggaacccagccacaaatac |
124 |
Q |
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| T |
7509 |
gttcctgtaatggattgatatgtttgcacggtgcttcttggaatgccgccgctaacgacgaagacatgtggttctgtctctggatcccagccacaaatac |
7608 |
T |
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| Q |
125 |
attatctgaaaaattcgggtattcagctaacctttttcggtatacatttggctatgatatttcaaatgatggttataaggtggttgccttctcgtcagaa |
224 |
Q |
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| T |
7609 |
attatcagaaaaattcgggtattcaactatcctttttcggtatacatttggctatgatatttcaaatgatggttataaggtggttgccttctcgtccttt |
7708 |
T |
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| Q |
225 |
caggacgagaaggtaaaagttttctgcttgactgataatgtttggagagatattcctactttt |
287 |
Q |
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| T |
7709 |
tctgacgagaagctaaaagttttctgcttgactgataatgtttggagagatattcctactttt |
7771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 19351584 - 19351469
Alignment:
| Q |
93 |
tggttccgtctctggaacccagccacaaatacattatctgaaaaattcgggtattcagctaacctttttcggtatacatttggctatgatatttcaaatg |
192 |
Q |
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||||| ||| ||||||||||||||||||| ||||||||||||||| | ||||||||| |||| ||||| || ||||||||||||||||||||||||| |
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| T |
19351584 |
tggttacgtttctggaacccagccacaaagacattatctgaaaaaatagggtattcaactaaattttttaagttaacatttggctatgatatttcaaatg |
19351485 |
T |
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| Q |
193 |
atggttataaggtggt |
208 |
Q |
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| T |
19351484 |
acacttataaggtggt |
19351469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 18914093 - 18914050
Alignment:
| Q |
93 |
tggttccgtctctggaacccagccacaaatacattatctgaaaa |
136 |
Q |
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| T |
18914093 |
tggttccgtttatggaacccagccacaaattcattatctgaaaa |
18914050 |
T |
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