View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15801_high_7 (Length: 258)
Name: NF15801_high_7
Description: NF15801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15801_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 43408375 - 43408145
Alignment:
| Q |
10 |
tcacagaaacaggtgcagatgatgactcctgctgaaggtagtggttttgagtgtgaattagggctgatctcctcctcataggtacccatatctgaataag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43408375 |
tcacagaaacaggtgcagatgatgactcctgctgaaggtagtggttttgagtgtgaattagggctgatctcctcctcataggtacccatatctgaataag |
43408276 |
T |
|
| Q |
110 |
gacgttgttggatgagttctttgtgtactcttttaagtaaccaacagcaaccactaatctttctttgacagatgttgttggacctggatttgccctaggc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43408275 |
gacgttgttggatgagttctttgtgtactcttttaagtaaccaacagcaaccactaatctttctttgacagatgttgttggacctggatttgccctaggc |
43408176 |
T |
|
| Q |
210 |
ccaatccaccatctcttcccaacaacaaaac |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43408175 |
ccaatccaccatctcttcccaacaacaaaac |
43408145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University