View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15801_low_1 (Length: 560)
Name: NF15801_low_1
Description: NF15801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15801_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 43409128 - 43408583
Alignment:
| Q |
1 |
ggttgttgtgaaggctgttcctactattccttgtccattaaaaaggtgatactcactgcacgcttcttggaatcccaatacatccatgtcaccaacataa |
100 |
Q |
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| T |
43409128 |
ggttgttgtgaaggctgttcctactattccttgtccattaaaaaggtgatactcactgcacgcttcttggaatcccaatacatccatgtcaccaacataa |
43409029 |
T |
|
| Q |
101 |
caagctgaatcaaccgttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccactacttccctttcctcctccttgttgttgttgtaggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409028 |
caagctgaatcaaccgttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccactacttccctttcctcctccttgttgttgttgtaggc |
43408929 |
T |
|
| Q |
201 |
aaggagcccatgttagtgctaatggtaaattgtgcgtcttgcacactgaagccaacacttccattatctcgttcacggctgcttcatatagctcttcaaa |
300 |
Q |
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| T |
43408928 |
aaggagcccatgttagtgctaatggtaaattgtgcgtcttgcacactgacgccaacacttccattatctcgttcaccgctgcttcatatagctcttcaaa |
43408829 |
T |
|
| Q |
301 |
tacctaattattcattatcatatcatttttagaaacaattttatttagtttttgttgatttaatcaaatccagtactatgatctga---tgattgtttgc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
43408828 |
tacctaattattcattatcatatcatttttagaaacaattttatatagtttttgttgatctaatcaaatccagtactatgatctgatgatgattgtttgc |
43408729 |
T |
|
| Q |
398 |
---ttacctttactgcttgtgggatattcatgttgtgactacttctaaaatcaacagcctgcatcagcaaaagatggatccatattcaatctcatgtatg |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408728 |
taattacctttactgcttgtgggatattcatgttgtgactacttctaaaatcaacagcctgcatcagcaaaagatggatccatattcaatctcatgtatg |
43408629 |
T |
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| Q |
495 |
tttctaacatttgttaatttaatttcaagaagaagtaacaaacata |
540 |
Q |
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| T |
43408628 |
tttctaacatttgttaatttaatttcaagaagaagtaacaaacata |
43408583 |
T |
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