View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15801_low_3 (Length: 431)

Name: NF15801_low_3
Description: NF15801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15801_low_3
NF15801_low_3
[»] chr1 (14 HSPs)
chr1 (15-132)||(4015229-4015346)
chr1 (259-391)||(4570561-4570693)
chr1 (259-398)||(4015270-4015406)
chr1 (259-308)||(21855820-21855869)
chr1 (15-132)||(4570621-4570741)
chr1 (26-87)||(21855725-21855786)
chr1 (25-81)||(4017083-4017139)
chr1 (330-403)||(21855716-21855786)
chr1 (258-306)||(4017168-4017216)
chr1 (259-312)||(10218605-10218658)
chr1 (363-400)||(39379412-39379449)
chr1 (330-388)||(4017083-4017138)
chr1 (365-409)||(4366828-4366872)
chr1 (366-406)||(10218715-10218755)
[»] chr5 (3 HSPs)
chr5 (259-308)||(24331336-24331385)
chr5 (26-87)||(24331241-24331302)
chr5 (330-403)||(24331232-24331302)
[»] chr4 (3 HSPs)
chr4 (363-405)||(3561304-3561346)
chr4 (363-409)||(3565426-3565472)
chr4 (363-396)||(3557408-3557441)
[»] chr7 (7 HSPs)
chr7 (361-391)||(29880954-29880984)
chr7 (363-400)||(29431343-29431380)
chr7 (28-85)||(29866911-29866968)
chr7 (31-84)||(29880931-29880984)
chr7 (363-400)||(29884951-29884988)
chr7 (363-391)||(22021074-22021102)
chr7 (363-391)||(22036792-22036820)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 4015346 - 4015229
Alignment:
Q  15 agagacaacatcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4015346 agagacaacatcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttg 4015247  T
Q  115 agtggtactataaactgg 132  Q
    ||||||||||||||||||    
T  4015246 agtggtactataaactgg 4015229  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 259 - 391
Target Start/End: Original strand, 4570561 - 4570693
Alignment:
Q  259 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctgcaat-attaatcaacaaccagaggtgagagttctcaacttgggtgg 357  Q
    ||||| ||||||||| |||||||||| || |||||||||||||||||||| ||| ||| |  |  || || | |||||| ||||||||||| ||||||||    
T  4570561 ctttggctttggatgtgataattcaaacgaaacttataaagtggtggcgtactgtaatcaagagacagcatc-agaggtcagagttctcaatttgggtgg 4570659  T
Q  358 tcgtgatgtttggagaaatattgaaagttttcct 391  Q
    |  |||||||||||||||||||||||||||||||    
T  4570660 tgatgatgtttggagaaatattgaaagttttcct 4570693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 398
Target Start/End: Complemental strand, 4015406 - 4015270
Alignment:
Q  259 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctg-caatattaatcaacaaccagaggtgagagttctcaacttgggtgg 357  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||  ||    |  |||| | |||| |||| |||||||||||||||||     
T  4015406 ctttgcctttggatgtgataattcaactggagcttataaagtggtggcgttctgtaaacgagagacaac-atcagatgtgaaagttctcaacttgggtg- 4015309  T
Q  358 tcgtgatgtttggagaaatattgaaagttttcctgttgttc 398  Q
       ||||||||||||||| ||||||||||||||||||||||    
T  4015308 --ttgatgtttggagaaacattgaaagttttcctgttgttc 4015270  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 21855869 - 21855820
Alignment:
Q  259 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgt 308  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21855869 ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt 21855820  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 4570621 - 4570741
Alignment:
Q  15 agagacaacatcagatgtgaaagttctcaacttgggtgttgat---gtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgt 111  Q
    ||||||| ||||||| || | ||||||||| ||||||| ||||   ||||||||||| |||||||||||||||  |||||||| |||| ||| ||||| |    
T  4570621 agagacagcatcagaggtcagagttctcaatttgggtggtgatgatgtttggagaaatattgaaagttttcctactgttcttggccacaaacctgtgtat 4570720  T
Q  112 ttgagtggtactataaactgg 132  Q
    |||||||| ||| | ||||||    
T  4570721 ttgagtggcactgtgaactgg 4570741  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 21855786 - 21855725
Alignment:
Q  26 cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt 87  Q
    |||| |||| |||| ||||| |||||| |||||||||||||||||| |||||||||||||||    
T  21855786 cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt 21855725  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 4017139 - 4017083
Alignment:
Q  25 tcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagtttt 81  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||| ||||| ||||||    
T  4017139 tcagaggtgaaagttctcaatttgggtgatgatgtttggagaaatattgacagtttt 4017083  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 21855786 - 21855716
Alignment:
Q  330 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagttttcctgttgttcctttt 403  Q
    |||||||||||||| ||||| |||||| |   |||||||||||||| || ||||||||||||||| ||||||||    
T  21855786 cagaggtgagagttatcaacatgggtgat---gatgtttggagaaacatcgaaagttttcctgttattcctttt 21855716  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 4017216 - 4017168
Alignment:
Q  258 gctttgcctttggatgcgataattcaaccggaacttataaagtggtggc 306  Q
    ||||||| |||||||| ||||||||||| | ||||||||||||||||||    
T  4017216 gctttgcatttggatgtgataattcaactgcaacttataaagtggtggc 4017168  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 312
Target Start/End: Original strand, 10218605 - 10218658
Alignment:
Q  259 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctg 312  Q
    |||||| |||||||| | ||||||||||||||  | ||||||||||||||||||    
T  10218605 ctttgcatttggatgtgttaattcaaccggaagctttaaagtggtggcgttctg 10218658  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 39379449 - 39379412
Alignment:
Q  363 atgtttggagaaatattgaaagttttcctgttgttcct 400  Q
    ||||||||||||||||||||||||| || |||||||||    
T  39379449 atgtttggagaaatattgaaagtttcccggttgttcct 39379412  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 388
Target Start/End: Complemental strand, 4017138 - 4017083
Alignment:
Q  330 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagtttt 388  Q
    ||||||||| ||||||||| ||||||| |   |||||||||||||||||||| ||||||    
T  4017138 cagaggtgaaagttctcaatttgggtgat---gatgtttggagaaatattgacagtttt 4017083  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 4366872 - 4366828
Alignment:
Q  365 gtttggagaaatattgaaagttttcctgttgttccttttcgtttg 409  Q
    ||||||||| ||||||||||||||||| |||||||| ||| ||||    
T  4366872 gtttggagagatattgaaagttttcctattgttcctcttcatttg 4366828  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 10218715 - 10218755
Alignment:
Q  366 tttggagaaatattgaaagttttcctgttgttccttttcgt 406  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  10218715 tttggagaaatattgaaacttttcctgtggttccttatcgt 10218755  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 24331385 - 24331336
Alignment:
Q  259 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgt 308  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24331385 ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt 24331336  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 24331302 - 24331241
Alignment:
Q  26 cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt 87  Q
    |||| |||| |||| ||||| |||||| |||||||||||||||||| |||||||||||||||    
T  24331302 cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt 24331241  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 24331302 - 24331232
Alignment:
Q  330 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagttttcctgttgttcctttt 403  Q
    |||||||||||||| ||||| |||||| |   |||||||||||||| || ||||||||||||||| ||||||||    
T  24331302 cagaggtgagagttatcaacatgggtgat---gatgtttggagaaacatcgaaagttttcctgttattcctttt 24331232  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 405
Target Start/End: Complemental strand, 3561346 - 3561304
Alignment:
Q  363 atgtttggagaaatattgaaagttttcctgttgttccttttcg 405  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  3561346 atgtttggagaaatattgaaagttttcctattgttcctcttcg 3561304  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 3565426 - 3565472
Alignment:
Q  363 atgtttggagaaatattgaaagttttcctgttgttccttttcgtttg 409  Q
    ||||||||||||||||||||||||| || | ||||||| ||||||||    
T  3565426 atgtttggagaaatattgaaagtttcccggctgttcctcttcgtttg 3565472  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 396
Target Start/End: Original strand, 3557408 - 3557441
Alignment:
Q  363 atgtttggagaaatattgaaagttttcctgttgt 396  Q
    ||||||||||||||||||||||||| ||||||||    
T  3557408 atgtttggagaaatattgaaagtttccctgttgt 3557441  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 391
Target Start/End: Original strand, 29880954 - 29880984
Alignment:
Q  361 tgatgtttggagaaatattgaaagttttcct 391  Q
    |||||||||||||||||||||||||||||||    
T  29880954 tgatgtttggagaaatattgaaagttttcct 29880984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 29431380 - 29431343
Alignment:
Q  363 atgtttggagaaatattgaaagttttcctgttgttcct 400  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  29431380 atgtttggagagatattgaaagtttccctgttgttcct 29431343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 29866911 - 29866968
Alignment:
Q  28 gatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctg 85  Q
    ||||||| ||||||||| || |||| ||||  ||||||||| ||||||||||||||||    
T  29866911 gatgtgagagttctcaatttcggtgatgatcgttggagaaatattgaaagttttcctg 29866968  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 29880931 - 29880984
Alignment:
Q  31 gtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcct 84  Q
    |||| |||||||||  | |||| ||||||||||||||| |||||||||||||||    
T  29880931 gtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagttttcct 29880984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 29884951 - 29884988
Alignment:
Q  363 atgtttggagaaatattgaaagttttcctgttgttcct 400  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  29884951 atgtttggagagatattgaaagttttccagttgttcct 29884988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 391
Target Start/End: Original strand, 22021074 - 22021102
Alignment:
Q  363 atgtttggagaaatattgaaagttttcct 391  Q
    |||||||||||||||||||||||||||||    
T  22021074 atgtttggagaaatattgaaagttttcct 22021102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 391
Target Start/End: Original strand, 22036792 - 22036820
Alignment:
Q  363 atgtttggagaaatattgaaagttttcct 391  Q
    |||||||||||||||||||||||||||||    
T  22036792 atgtttggagaaatattgaaagttttcct 22036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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