View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15801_low_4 (Length: 350)

Name: NF15801_low_4
Description: NF15801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15801_low_4
NF15801_low_4
[»] chr6 (26 HSPs)
chr6 (1-350)||(4325258-4325607)
chr6 (154-350)||(8420150-8420343)
chr6 (154-231)||(2514626-2514703)
chr6 (155-231)||(10452429-10452505)
chr6 (150-203)||(4247731-4247784)
chr6 (154-227)||(5328898-5328971)
chr6 (242-279)||(7945907-7945944)
chr6 (288-349)||(32917252-32917313)
chr6 (159-203)||(32843412-32843456)
chr6 (153-228)||(27889916-27889990)
chr6 (150-205)||(30523581-30523635)
chr6 (153-228)||(31420881-31420956)
chr6 (154-205)||(33068656-33068707)
chr6 (154-228)||(3217262-3217336)
chr6 (161-231)||(4006645-4006715)
chr6 (154-204)||(31668781-31668831)
chr6 (155-232)||(3204610-3204687)
chr6 (155-204)||(5554861-5554910)
chr6 (150-191)||(6647309-6647350)
chr6 (159-204)||(6654544-6654589)
chr6 (154-231)||(7351677-7351754)
chr6 (150-191)||(8010277-8010318)
chr6 (154-231)||(29274298-29274375)
chr6 (152-205)||(31670970-31671023)
chr6 (154-191)||(32578059-32578096)
chr6 (152-228)||(10749300-10749375)
[»] scaffold0590 (1 HSPs)
scaffold0590 (155-229)||(1145-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (155-229)||(2756-2830)
[»] chr7 (16 HSPs)
chr7 (150-228)||(991990-992068)
chr7 (154-230)||(27121656-27121732)
chr7 (151-230)||(33894544-33894622)
chr7 (154-224)||(6552346-6552416)
chr7 (152-228)||(45593791-45593867)
chr7 (153-224)||(7244625-7244696)
chr7 (154-205)||(26935645-26935696)
chr7 (290-349)||(29287284-29287342)
chr7 (153-200)||(33646059-33646106)
chr7 (157-344)||(3610699-3610883)
chr7 (151-225)||(47004008-47004082)
chr7 (150-211)||(8445206-8445267)
chr7 (156-205)||(24973870-24973919)
chr7 (249-350)||(33894644-33894744)
chr7 (154-231)||(49060464-49060541)
chr7 (151-231)||(27481363-27481443)
[»] chr5 (19 HSPs)
chr5 (158-231)||(35135731-35135804)
chr5 (155-350)||(28586719-28586911)
chr5 (151-208)||(40097495-40097552)
chr5 (154-202)||(40499773-40499821)
chr5 (215-350)||(40534181-40534316)
chr5 (154-205)||(20982230-20982281)
chr5 (157-228)||(37063146-37063217)
chr5 (262-344)||(12595675-12595756)
chr5 (242-343)||(16380531-16380632)
chr5 (156-224)||(7096203-7096271)
chr5 (154-205)||(13224353-13224404)
chr5 (156-231)||(18704105-18704179)
chr5 (154-205)||(26516222-26516273)
chr5 (149-204)||(37690733-37690787)
chr5 (215-278)||(32408616-32408677)
chr5 (154-231)||(29116999-29117076)
chr5 (217-279)||(35553211-35553271)
chr5 (154-231)||(36539670-36539747)
chr5 (161-205)||(40048375-40048419)
[»] chr2 (24 HSPs)
chr2 (154-231)||(17952770-17952847)
chr2 (150-276)||(18962064-18962188)
chr2 (154-231)||(28803575-28803652)
chr2 (154-205)||(10150679-10150730)
chr2 (152-231)||(14209199-14209278)
chr2 (161-231)||(10143103-10143173)
chr2 (249-350)||(41809198-41809298)
chr2 (171-230)||(3458598-3458657)
chr2 (150-205)||(3673727-3673782)
chr2 (154-205)||(4550701-4550752)
chr2 (154-205)||(27288557-27288608)
chr2 (251-306)||(30552640-30552695)
chr2 (153-191)||(18884804-18884842)
chr2 (161-231)||(25609727-25609797)
chr2 (154-191)||(2400080-2400117)
chr2 (154-231)||(9478223-9478300)
chr2 (249-350)||(35329771-35329871)
chr2 (151-227)||(3102614-3102690)
chr2 (150-190)||(11393476-11393516)
chr2 (150-190)||(11410137-11410177)
chr2 (154-230)||(33267586-33267662)
chr2 (154-230)||(34339047-34339123)
chr2 (154-186)||(35809857-35809889)
chr2 (159-195)||(44267074-44267110)
[»] chr1 (25 HSPs)
chr1 (238-350)||(6279404-6279516)
chr1 (169-231)||(49692119-49692181)
chr1 (162-227)||(45804209-45804274)
chr1 (168-231)||(29007785-29007848)
chr1 (152-202)||(4202227-4202277)
chr1 (169-280)||(48830098-48830207)
chr1 (155-228)||(45107548-45107620)
chr1 (151-224)||(45234118-45234191)
chr1 (163-231)||(15360827-15360895)
chr1 (249-349)||(44422716-44422815)
chr1 (154-205)||(16980750-16980801)
chr1 (153-228)||(46980201-46980276)
chr1 (154-205)||(49557065-49557116)
chr1 (177-231)||(44936659-44936713)
chr1 (149-191)||(52190057-52190099)
chr1 (157-202)||(13037791-13037836)
chr1 (152-225)||(15489355-15489427)
chr1 (154-231)||(43372028-43372105)
chr1 (154-231)||(52286602-52286679)
chr1 (256-324)||(11639395-11639462)
chr1 (157-229)||(17269177-17269249)
chr1 (150-202)||(38651507-38651559)
chr1 (290-350)||(43420315-43420375)
chr1 (161-205)||(45769838-45769882)
chr1 (154-221)||(48282057-48282125)
[»] chr8 (28 HSPs)
chr8 (152-285)||(4558720-4558851)
chr8 (150-231)||(3645885-3645966)
chr8 (158-276)||(11188181-11188297)
chr8 (154-350)||(28769292-28769485)
chr8 (149-204)||(29170036-29170091)
chr8 (153-224)||(34563173-34563244)
chr8 (154-231)||(1117270-1117346)
chr8 (154-195)||(1433469-1433510)
chr8 (258-350)||(9700027-9700118)
chr8 (249-350)||(14949883-14949983)
chr8 (259-350)||(21130641-21130729)
chr8 (153-205)||(29699177-29699229)
chr8 (154-205)||(14482126-14482177)
chr8 (153-224)||(14949811-14949882)
chr8 (154-205)||(35534956-35535007)
chr8 (239-280)||(10075573-10075615)
chr8 (150-191)||(6918951-6918992)
chr8 (150-191)||(8629029-8629070)
chr8 (248-285)||(23996644-23996681)
chr8 (249-326)||(26473729-26473805)
chr8 (154-191)||(26813914-26813951)
chr8 (171-231)||(1470925-1470985)
chr8 (253-325)||(5088873-5088944)
chr8 (150-190)||(13652135-13652175)
chr8 (150-190)||(13710778-13710818)
chr8 (160-224)||(14929192-14929256)
chr8 (153-205)||(35298573-35298625)
chr8 (157-205)||(40356798-40356846)
[»] chr3 (24 HSPs)
chr3 (154-279)||(38462205-38462328)
chr3 (152-230)||(27792794-27792872)
chr3 (152-205)||(16790183-16790236)
chr3 (154-228)||(22232750-22232824)
chr3 (251-349)||(30923853-30923949)
chr3 (157-198)||(24158604-24158645)
chr3 (154-231)||(41028920-41028997)
chr3 (154-227)||(54775052-54775125)
chr3 (163-231)||(1395604-1395672)
chr3 (151-231)||(43116497-43116577)
chr3 (176-227)||(20143871-20143921)
chr3 (176-227)||(23269268-23269318)
chr3 (154-205)||(39971243-39971294)
chr3 (292-350)||(1810036-1810094)
chr3 (149-195)||(14548819-14548865)
chr3 (159-205)||(20173983-20174029)
chr3 (152-202)||(28283675-28283725)
chr3 (153-231)||(32703061-32703139)
chr3 (161-206)||(2304335-2304380)
chr3 (154-203)||(20504136-20504185)
chr3 (158-231)||(49586985-49587057)
chr3 (163-228)||(53736185-53736250)
chr3 (153-205)||(16790451-16790503)
chr3 (150-202)||(25185913-25185965)
[»] scaffold0100 (1 HSPs)
scaffold0100 (153-208)||(42540-42595)
[»] chr4 (26 HSPs)
chr4 (152-230)||(4663766-4663844)
chr4 (154-320)||(54325020-54325183)
chr4 (157-229)||(32724046-32724118)
chr4 (152-203)||(4191661-4191712)
chr4 (152-231)||(30024622-30024701)
chr4 (153-227)||(36734816-36734890)
chr4 (150-191)||(2980580-2980621)
chr4 (154-227)||(5219573-5219646)
chr4 (249-334)||(14011251-14011335)
chr4 (154-227)||(19422342-19422415)
chr4 (157-222)||(47970245-47970310)
chr4 (154-231)||(49219063-49219140)
chr4 (249-333)||(21952965-21953048)
chr4 (154-228)||(24193509-24193583)
chr4 (159-205)||(28623218-28623264)
chr4 (162-231)||(21593081-21593149)
chr4 (162-211)||(25717434-25717483)
chr4 (154-231)||(30207640-30207716)
chr4 (154-231)||(44319874-44319950)
chr4 (255-336)||(53315349-53315429)
chr4 (152-224)||(7022590-7022662)
chr4 (159-231)||(8130103-8130175)
chr4 (154-230)||(22684586-22684662)
chr4 (154-190)||(27321941-27321977)
chr4 (153-205)||(39929856-39929908)
chr4 (153-205)||(51555962-51556014)
[»] scaffold0020 (1 HSPs)
scaffold0020 (249-349)||(159927-160026)
[»] scaffold0024 (1 HSPs)
scaffold0024 (154-227)||(27500-27573)
[»] scaffold0508 (1 HSPs)
scaffold0508 (154-204)||(9871-9921)
[»] scaffold0060 (1 HSPs)
scaffold0060 (150-211)||(63374-63435)


Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 4325607 - 4325258
Alignment:
Q  1 ccaatctctcgaaatactgtcaacccagtcttttacctgaatcattgtgaaacaatgcaaaaatgtgatttgagaattttgtcatctcaatgctatgact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4325607 ccaatctctcgaaatactgtcaacccagtcttttacctgaatcatcgtgaaacaatgcaaaaatgtgatttgagaattttgtcatctcaatgctatgact 4325508  T
Q  101 ttgagattcttaaggatgaacagttcaagtaggcgcttatagcatacttgtgtttatcatataagtgcttatgtctaagttatttctataataaatgata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4325507 ttgagattcttaaggatgaacagttcaagtaggcgcttatagcatacttgtgtttatcatataagtgcttatgtctaagttatttctataataaatgata 4325408  T
Q  201 aaatagagacagactattttcatataagctagtatacactattttcatagctatcctagagagcttatggaaataagctacaaacgggcttatggacatg 300  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4325407 aaatagagacaaactattttcatataagctagtatacactattttcatagctatcctagagagcttatggaaataagctacaaacgggcttatggacatg 4325308  T
Q  301 tgataaactatttccctaagctctcacaaatagtctcacaagtgtttatg 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4325307 tgataaactatttccctaagctgtcacaaatagtctcacaagtgtttatg 4325258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 350
Target Start/End: Complemental strand, 8420343 - 8420150
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagctagtatacactattttcat-agct 252  Q
    |||||||||||||||||||||  ||||||||||| ||||||||||||||||| || || ||| | || ||||||   | ||||  || || || | ||||    
T  8420343 ttatcatataagtgcttatgtacaagttatttctttaataaatgataaaataaagtcaaactgtgtttatataa---aatataagctgttctcgtaagct 8420247  T
Q  253 atcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgtttatg 350  Q
    ||  | ||||||||||||||||||| |  |||   |||| ||||||||| |||| |||||||  ||||||||||| || |||||||||||||||||||    
T  8420246 ataatggagagcttatggaaataag-ttgaaaatagcttgtggacatgtcataagctatttctataagctctcactaacagtctcacaagtgtttatg 8420150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 2514626 - 2514703
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||| ||||||||||||| |||| ||||||||||||||| ||||||||| || || |||| ||| |||| |||||    
T  2514626 ttatcatgtaagtgcttatgtataagctatttctataataaaagataaaataaagtcaaactaattttatatgagcta 2514703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 10452505 - 10452429
Alignment:
Q  155 tatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||| ||||||||||| |||| ||||||||||| |||  |||||||| |  || |||||||||||||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagcta 10452429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 4247784 - 4247731
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaa 203  Q
    ||||||||||| ||||||||||||| |||| ||||||||||| ||| |||||||    
T  4247784 gtgtttatcatgtaagtgcttatgtataagctatttctataacaaaagataaaa 4247731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 5328898 - 5328971
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataa 227  Q
    |||||||| ||||||||| || |||||||||||||||| ||| ||||||||| || || || ||||| ||||||    
T  5328898 ttatcataaaagtgcttacgtttaagttatttctataacaaaagataaaataaagtcaaaccatttttatataa 5328971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 7945944 - 7945907
Alignment:
Q  242 ttttcatagctatcctagagagcttatggaaataagct 279  Q
    |||||||||||||||| |||||||||||||||||||||    
T  7945944 ttttcatagctatcctggagagcttatggaaataagct 7945907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 32917252 - 32917313
Alignment:
Q  288 gcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgtttat 349  Q
    |||||||||||||| ||||  | ||||| ||||||||| |||| ||||||||||||||||||    
T  32917252 gcttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttat 32917313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 32843456 - 32843412
Alignment:
Q  159 atataagtgcttatgtctaagttatttctataataaatgataaaa 203  Q
    |||||||||||||||| |||||||||||||||||||  |||||||    
T  32843456 atataagtgcttatgtataagttatttctataataagagataaaa 32843412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 27889990 - 27889916
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    |||||||||| |||||||||||  ||||||||||||||| ||  ||||||||| |  || ||||||||||||||||    
T  27889990 tttatcatatgagtgcttatgtacaagttatttctataacaacagataaaata-attcaaactattttcatataag 27889916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 30523581 - 30523635
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||| |||||||||||||| ||||||| |||||||| ||||| |||||||||||||    
T  30523581 gtgtctatcatataagtgcgtatgtcttagttattt-tataacaaatgataaaata 30523635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 31420881 - 31420956
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    ||||| ||||||||| |||| | |||| ||||||||||||||||| ||||||| |  || |||||||| |||||||    
T  31420881 tttattatataagtgtttatttataagctatttctataataaatggtaaaataaaatcaaactatttttatataag 31420956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 33068707 - 33068656
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||| |||| ||||||||| |||||||||||||||| ||| |||||||||    
T  33068707 ttatcaaataaatgcttatgtataagttatttctataacaaaagataaaata 33068656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 3217336 - 3217262
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    ||||||||||||||||||||| |||| ||||| | ||| | | ||||||||| || || | ||||||||||||||    
T  3217336 ttatcatataagtgcttatgtataagctatttttgtaagagaagataaaataaagtcaaattattttcatataag 3217262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 4006645 - 4006715
Alignment:
Q  161 ataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||||  |||| ||||||||||| ||||||||||||| || || | | |||| ||||||||||    
T  4006645 ataagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagcta 4006715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 31668831 - 31668781
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaat 204  Q
    ||||||||||||||||||||| |||| ||||||||||| |||  |||||||    
T  31668831 ttatcatataagtgcttatgtataagctatttctataacaaaacataaaat 31668781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 3204687 - 3204610
Alignment:
Q  155 tatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagctag 232  Q
    ||||||||||||||||| |  |||  || |||||||||||| ||||||||| || |  ||| ||||||||||||||||    
T  3204687 tatcatataagtgcttacgaataaactacttctataataaaagataaaataaagtcgaactgttttcatataagctag 3204610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 5554910 - 5554861
Alignment:
Q  155 tatcatataagtgcttatgtctaagttatttctataataaatgataaaat 204  Q
    ||||||||| ||| |||||| |||||||||||||||| ||| ||||||||    
T  5554910 tatcatatacgtgtttatgtataagttatttctataacaaaagataaaat 5554861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 6647309 - 6647350
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataa 191  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||    
T  6647309 gtgttcatcatatgagtgcttatgtataagttatttctataa 6647350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 6654544 - 6654589
Alignment:
Q  159 atataagtgcttatgtctaagttatttctataataaatgataaaat 204  Q
    ||||||| |||||||| |||||||||||||||| |||| |||||||    
T  6654544 atataagggcttatgtataagttatttctataacaaataataaaat 6654589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 7351754 - 7351677
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||| ||||||||| |||  ||||| |||||||||  |||||||| ||  | ||| |||||||||||||||    
T  7351754 ttatcatataaatgcttatgtataaactatttatataataaactataaaataaagttaaactgttttcatataagcta 7351677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 8010277 - 8010318
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataa 191  Q
    |||||||||||||||||||||| || |||| |||||||||||    
T  8010277 gtgtttatcatataagtgcttaggtataagctatttctataa 8010318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 29274375 - 29274298
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||| || ||||||||| |||| ||||||||||  ||| ||||||||| || || | | |||||||||||||||    
T  29274375 ttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagcta 29274298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 31671023 - 31670970
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    ||||||||||||||||||||| | ||||| |||||||||| ||  |||||||||    
T  31671023 gtttatcatataagtgcttatatataagtcatttctataacaatagataaaata 31670970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 32578096 - 32578059
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataa 191  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  32578096 ttatcatataagtgcttatgtgtaagctatttctataa 32578059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 10749375 - 10749300
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    ||||||||||||||   |||||| ||||| |||||||||||||| ||||||||| ||  | | ||||||||||||||    
T  10749375 gtttatcatataagatgttatgtataagt-atttctataataaaagataaaataaagttaaattattttcatataag 10749300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 1219 - 1145
Alignment:
Q  155 tatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagc 229  Q
    |||||||||||||||||||| |||| ||||||||||| ||| ||||||||| || || |||||| ||||||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 2756 - 2830
Alignment:
Q  155 tatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagc 229  Q
    |||||||||||||||||||| |||| ||||||||||| ||| ||||||||| || || |||||| ||||||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 991990 - 992068
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||  |||||||| ||||| | ||||||||||||||    
T  991990 gtgtttatcatataagtgcttacgtataagttgtttctataacaaaaaataaaataaagacaaaatattttcatataag 992068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 27121732 - 27121656
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagct 230  Q
    ||||||||||| | ||||||| |||| ||||||||||||||||||||||||| || || | | ||||||||||||||    
T  27121732 ttatcatataattccttatgtataagatatttctataataaatgataaaataaagtcaaattgttttcatataagct 27121656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 33894544 - 33894622
Alignment:
Q  151 tgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagct 230  Q
    |||| ||||| ||||||||||||| |||| ||||||||||| ||| ||||||||| || || ||| ||||||||||||||    
T  33894544 tgttcatcatgtaagtgcttatgtataagctatttctataacaaaagataaaata-agtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 6552416 - 6552346
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcata 224  Q
    |||||||||||||||||||||  |||||||||||| || ||| ||||||||||  | | ||||||||||||    
T  6552416 ttatcatataagtgcttatgtacaagttatttctacaacaaaagataaaatagctataaactattttcata 6552346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 45593867 - 45593791
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    ||||||||||||| ||||||||| |||| ||||||| ||| |||  |||||||| || || ||| ||||||||||||    
T  45593867 gtttatcatataaatgcttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcatataag 45593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 7244625 - 7244696
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcata 224  Q
    |||||||||||||||||||||| |||| ||||||||||  ||| ||||||| | || || ||| ||||||||    
T  7244625 tttatcatataagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttcata 7244696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 26935696 - 26935645
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    ||||||||||||||||| ||| |||| ||||| ||||| |||||||||||||    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaata 26935645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 29287284 - 29287342
Alignment:
Q  290 ttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgtttat 349  Q
    |||||||||||| |||| |||||| | |||||||| |||||||||||||| |||||||||    
T  29287284 ttatggacatgtcataagctattttcataagctct-acaaatagtctcacgagtgtttat 29287342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 33646106 - 33646059
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgata 200  Q
    |||||||||||||||  |||||||||||||||| ||||||||| ||||    
T  33646106 tttatcatataagtgtctatgtctaagttatttatataataaaagata 33646059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 344
Target Start/End: Complemental strand, 3610883 - 3610699
Alignment:
Q  157 tcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagctagtatacactattttcatag-ctatc 255  Q
    |||||||||||||||||| |||| |||||||| || ||| ||||||||  || || ||| ||||  |||||||||   ||   | ||||| ||  |||||    
T  3610883 tcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagcta---taagttgttttcgtaaactatc 3610787  T
Q  256 ctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtg 344  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||| || | || ||||| |||| | || |||| ||| |||||||||    
T  3610786 ctagagagcttatagaaataagct-gaaaaaggcttatggacatgtcattagctgtttccataaggtttcccaaaaagtatcacaagtg 3610699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 47004008 - 47004082
Alignment:
Q  151 tgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatat 225  Q
    ||||||||||||||||| |||| | |||| ||||||||||| ||  ||||||||| || || |||||||| ||||    
T  47004008 tgtttatcatataagtgtttatatgtaagctatttctataacaatagataaaataaagtcaaactatttttatat 47004082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 8445206 - 8445267
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagaca 211  Q
    ||||||||||||||||||||| | | |||| ||||| ||||| ||| ||||||||| |||||    
T  8445206 gtgtttatcatataagtgcttgtttataagctatttttataacaaaagataaaataaagaca 8445267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 24973870 - 24973919
Alignment:
Q  156 atcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||||||||||||||  ||| ||||||||||| ||| |||||||||    
T  24973870 atcatataagtgcttatgtaaaagctatttctataacaaaagataaaata 24973919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 350
Target Start/End: Original strand, 33894644 - 33894744
Alignment:
Q  249 agctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgttta 348  Q
    ||||||||| || || |||| ||||||||||  ||||   ||||||||||||| |||  || ||| | |||||||||||||| ||||||||||||| |||    
T  33894644 agctatcctggaaagtttattgaaataagctgaaaacaa-cttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgctta 33894742  T
Q  349 tg 350  Q
    ||    
T  33894743 tg 33894744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 49060464 - 49060541
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||||  |||||| |||| ||||||||||| |||  |||||||| || || | |||||| ||||||||||    
T  49060464 ttatcatataagtatttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagcta 49060541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 27481443 - 27481363
Alignment:
Q  151 tgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||| ||||||||| |||||| |||| ||||||||||| ||| |||||||   || || ||| ||| |||||||||||    
T  27481443 tgtttattatataagtgtttatgtataagctatttctataacaaaggataaaacgaagtcaaactgtttccatataagcta 27481363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 35135804 - 35135731
Alignment:
Q  158 catataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||| |||||| |||| ||||||||||| ||| ||||||||| || || |||||||||||||||||||    
T  35135804 catataagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagcta 35135731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 350
Target Start/End: Complemental strand, 28586911 - 28586719
Alignment:
Q  155 tatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagctagtatacactattttcat-agcta 253  Q
    ||||||||| ||| |||||| ||   ||||||||||| ||| ||||||||| || || ||| |||||||||||   | ||||  || |||| |  |||||    
T  28586911 tatcatatatgtggttatgtatacactatttctataacaaaagataaaataaagtcaaactgttttcatataa---attataagctgttttgacgagcta 28586815  T
Q  254 tcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgtttatg 350  Q
    ||||||||||||||| ||||||||||  ||||  ||||| ||| |||| |||| |||||||| ||||||||| |||| ||| |||||| || |||||    
T  28586814 tcctagagagcttatcgaaataagctgaaaac-agcttacggatatgtcataagctatttccataagctctcccaaacagtttcacaaatgcttatg 28586719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 40097552 - 40097495
Alignment:
Q  151 tgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagag 208  Q
    |||||||||||||||||| ||||| |||||||||||||||| | | ||||||||||||    
T  40097552 tgtttatcatataagtgcgtatgtataagttatttctataacagaagataaaatagag 40097495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 40499821 - 40499773
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaa 202  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  40499821 ttatcatataagtgcttatgtacaagttatttctataacaaatgataaa 40499773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 350
Target Start/End: Original strand, 40534181 - 40534316
Alignment:
Q  215 tattttcatataagctagtatacactattttcat-agctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactattt 313  Q
    ||||||||||||||||||||||   | ||||||| |||||||| ||||||||||||||| |||| |  ||||    ||||| |||||| |||| ||| ||    
T  40534181 tattttcatataagctagtataagttgttttcataagctatcccagagagcttatggaagtaagatgaaaac-taattatgaacatgtcataagctactt 40534279  T
Q  314 ccctaagctctcacaaatagtctcacaagtgtttatg 350  Q
    || |||||||||  ||| ||| |||||||||||||||    
T  40534280 ccataagctctcctaaacagtatcacaagtgtttatg 40534316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 20982281 - 20982230
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| |||||||||    
T  20982281 ttatcatataagtgcttatgtataagctatttctataacaaaggataaaata 20982230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 37063217 - 37063146
Alignment:
Q  157 tcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    |||||||| ||||||||| |||  ||||||||||| ||| ||||||||| || || ||||||||||||||||    
T  37063217 tcatataaatgcttatgtataaactatttctataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 12595756 - 12595675
Alignment:
Q  262 agcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtg 344  Q
    ||||||| ||||||||||  |||||| |||||| |||||  |||| || ||||| ||||||||| ||||||||||||||||||    
T  12595756 agcttatagaaataagctgaaaacgg-cttatgaacatgcaataagctgtttccttaagctctctcaaatagtctcacaagtg 12595675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 343
Target Start/End: Complemental strand, 16380632 - 16380531
Alignment:
Q  242 ttttcatagctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaa 341  Q
    |||||||| |||| | ||||| |||||||||||||||| ||||   ||||||||||||||  ||| || ||||| ||| ||||  |||||||| ||||||    
T  16380632 ttttcataactattccagagaacttatggaaataagctgcaaaacagcttatggacatgtcgtaagctgtttccataaactcttgcaaatagtttcacaa 16380533  T
Q  342 gt 343  Q
    ||    
T  16380532 gt 16380531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 7096271 - 7096203
Alignment:
Q  156 atcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcata 224  Q
    |||||| |||||||||||| |||| ||||||||||| ||| ||||||||| || || || |||||||||    
T  7096271 atcatacaagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaaccattttcata 7096203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 13224353 - 13224404
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||| |||||||||||| |||| ||||||||||| ||| |||||||||    
T  13224353 ttatcatagaagtgcttatgtataagctatttctataacaaaagataaaata 13224404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 18704179 - 18704105
Alignment:
Q  156 atcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||| ||||||| |||||||||||||||| ||| ||| ||||| || ||  ||||||| ||||||||||    
T  18704179 atcatataagttcttatgtataagttatttctataacaaaagat-aaataaagtcaagctatttttatataagcta 18704105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 26516222 - 26516273
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    ||||||||||||||||||||| |||| |||||||| || ||| |||||||||    
T  26516222 ttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaata 26516273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 37690787 - 37690733
Alignment:
Q  149 tgtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaat 204  Q
    |||||||||||| |||||||| ||||  ||||||||||||||||||| ||||||||    
T  37690787 tgtgtttatcatttaagtgct-atgtaaaagttatttctataataaaagataaaat 37690733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 32408677 - 32408616
Alignment:
Q  215 tattttcatataagctagtatacactattttcata-gctatcctagagagcttatggaaataagc 278  Q
    |||||||||||||||||   || |||||||||||| ||||||||  |||||||||||||||||||    
T  32408677 tattttcatataagcta---taaactattttcataagctatcctgaagagcttatggaaataagc 32408616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 29117076 - 29116999
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||  || |||||| || ||||||||||||| ||| ||||||||| || || ||| ||||| |||||||||    
T  29117076 ttatcatatagctgattatgtatatgttatttctataacaaaagataaaataaagtcaaactgttttcgtataagcta 29116999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 35553271 - 35553211
Alignment:
Q  217 ttttcatataagctagtatacactattttcata-gctatcctagagagcttatggaaataagct 279  Q
    |||||||||||||||   || |||||||||||| ||||| || |||||||||||||||||||||    
T  35553271 ttttcatataagcta---taaactattttcatacgctattctggagagcttatggaaataagct 35553211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 36539670 - 36539747
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||||||||||||| |||| ||||| | ||  ||| ||||||||| || ||  || |||||||||||||||    
T  36539670 ttatcatataagtgcttatgtgtaagctatttgtttatcaaaagataaaataaagtcaacctgttttcatataagcta 36539747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 40048419 - 40048375
Alignment:
Q  161 ataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||||||||| |||||| ||||||||| ||| |||||||||    
T  40048419 ataagtgcttatgtataagttgtttctataacaaaagataaaata 40048375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 17952847 - 17952770
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||| |||||| | |||| ||||||||||| ||| ||||||||| || || |||||||||||||||||||    
T  17952847 ttatcatataagagcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagcta 17952770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 18962188 - 18962064
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagctagtatacactattttcat- 248  Q
    ||||||||||| ||||||||||||| | || ||||| ||||| ||| ||||||||| ||  | ||| |||||||||||||   |||| |||||||||||     
T  18962188 gtgtttatcatgtaagtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagc---tataaactattttcata 18962092  T
Q  249 agctatcctagagagcttatggaaataa 276  Q
    ||||||| | |||||  |||||||||||    
T  18962091 agctatcatggagagactatggaaataa 18962064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 28803652 - 28803575
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||||||||||| | ||||||||||| |||| ||| ||||||||| || || |||  ||||||||||||||    
T  28803652 ttatcatataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagcta 28803575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 10150679 - 10150730
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||| ||||||||| |||||| |||||||||||||||||||| |||||||||    
T  10150679 ttattatataagtgtttatgtataagttatttctataataaaagataaaata 10150730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 14209199 - 14209278
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||||||| || |||||||| |||||| |||| ||| ||||||||| |  || ||| |||||||||||||||    
T  14209199 gtttatcatataagtgtttctgtctaagctatttcaataacaaaagataaaataaattcaaactgttttcatataagcta 14209278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 10143103 - 10143173
Alignment:
Q  161 ataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||||| |||||||||||||||| ||| ||||||||  || || ||| |||| ||||||||||    
T  10143103 ataagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagcta 10143173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 350
Target Start/End: Complemental strand, 41809298 - 41809198
Alignment:
Q  249 agctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgttta 348  Q
    ||||||| |||| ||||||||||||||||||| ||||   |||||| |||||| ||||  | |||||  ||||||| ||||  |||||||||||||||||    
T  41809298 agctatcttagaaagcttatggaaataagctaaaaac-aacttatgaacatgtcataagttgtttccacaagctcttacaatcagtctcacaagtgttta 41809200  T
Q  349 tg 350  Q
    ||    
T  41809199 tg 41809198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 3458598 - 3458657
Alignment:
Q  171 atgtctaagttatttctataataaatgataaaatagagacagactattttcatataagct 230  Q
    ||||||||||||||| ||||| ||| ||||||||| || || ||| ||||||||||||||    
T  3458598 atgtctaagttatttttataacaaaagataaaataaagtcaaacttttttcatataagct 3458657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 3673727 - 3673782
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||| |||||||||||||||||| | |||||||||||||| |||  ||||||||    
T  3673727 gtgtttgtcatataagtgcttatgtattagttatttctataacaaaatataaaata 3673782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 4550701 - 4550752
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||| |||||||||||||| |||||| |||| |||||||| |||||||||    
T  4550701 ttatcacataagtgcttatgtataagttgtttccataataaaagataaaata 4550752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 27288557 - 27288608
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    ||||| |||||||||||||||  ||||| ||||||||||||| |||||||||    
T  27288557 ttatcctataagtgcttatgtaaaagttgtttctataataaaagataaaata 27288608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 30552695 - 30552640
Alignment:
Q  251 ctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataa 306  Q
    |||||||||||||||||||||||||||||| ||||   ||||| ||||||| ||||    
T  30552695 ctatcctagagagcttatggaaataagctaaaaaccaacttattgacatgtcataa 30552640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 18884804 - 18884842
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataa 191  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  18884804 tttatcatataagtgctcatgtataagttatttctataa 18884842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 25609727 - 25609797
Alignment:
Q  161 ataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||||| |||| ||||||||||| ||| ||||||||| || ||   ||||||| |||||||||    
T  25609727 ataagtgcttatgtataagctatttctataagaaaagataaaataaagtcaatttattttcgtataagcta 25609797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 2400080 - 2400117
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataa 191  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  2400080 ttatcatataagtgcttatgtataagttgtttctataa 2400117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 9478223 - 9478300
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||||| |||||| |||| ||||||||||| |   ||||||||| |  || | |||||||||||||||||    
T  9478223 ttatcatataagtgtttatgtataagctatttctataacagtagataaaataaactcaaaatattttcatataagcta 9478300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 350
Target Start/End: Complemental strand, 35329871 - 35329771
Alignment:
Q  249 agctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgttta 348  Q
    ||||||| | |||||||||||||||||||||  ||||   |||| || ||||| || |||| ||||| |||| |||||||| || |||||| ||||||||    
T  35329871 agctatcttggagagcttatggaaataagctggaaac-aacttaggggcatgtcattaactgtttccataagatctcacaagtaatctcactagtgttta 35329773  T
Q  349 tg 350  Q
    ||    
T  35329772 tg 35329771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 3102614 - 3102690
Alignment:
Q  151 tgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataa 227  Q
    |||||||||||||| ||||||||| |||| ||||| ||||  |||  |||||||| || || |||||||| ||||||    
T  3102614 tgtttatcatataactgcttatgtataagctatttttatagcaaaatataaaataaagtcaaactatttttatataa 3102690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 11393516 - 11393476
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctata 190  Q
    ||||||||||||||||||||||| | |||| ||||||||||    
T  11393516 gtgtttatcatataagtgcttatctataagctatttctata 11393476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 11410177 - 11410137
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctata 190  Q
    ||||||||||||||||||||||| | |||| ||||||||||    
T  11410177 gtgtttatcatataagtgcttatctataagctatttctata 11410137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 33267662 - 33267586
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagct 230  Q
    ||||||||||||||||||||| |||  ||||||||||| |||   ||||||| ||  | ||| ||||||||||||||    
T  33267662 ttatcatataagtgcttatgtataatctatttctataacaaacagtaaaataaagttaaactgttttcatataagct 33267586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 34339047 - 34339123
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagct 230  Q
    ||||||||||||||||||||| |||  | ||||||||   || ||||||||| || |||||| ||||| ||||||||    
T  34339047 ttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagct 34339123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 35809857 - 35809889
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttc 186  Q
    ||||||||||||||||||||| |||||||||||    
T  35809857 ttatcatataagtgcttatgtataagttatttc 35809889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 44267110 - 44267074
Alignment:
Q  159 atataagtgcttatgtctaagttatttctataataaa 195  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  44267110 atataactgcttatgtataagttatttctataataaa 44267074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 350
Target Start/End: Original strand, 6279404 - 6279516
Alignment:
Q  238 actattttcata-gctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtct 336  Q
    |||||||||||| |||||||||||||||||||||||||| |||  ||||   |||||||||||||| | |||| ||||| ||||||||| |||| || |     
T  6279404 actattttcataagctatcctagagagcttatggaaatacgctgaaaac-aacttatggacatgtggttaactgtttccataagctctctcaaacagcca 6279502  T
Q  337 cacaagtgtttatg 350  Q
    |||||||| |||||    
T  6279503 cacaagtgcttatg 6279516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 49692181 - 49692119
Alignment:
Q  169 ttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||| |||||||||||||||||||| ||||||||| || |||||||| || ||||||||||    
T  49692181 ttatgtataagttatttctataataaaggataaaataaagtcagactatatttatataagcta 49692119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 45804209 - 45804274
Alignment:
Q  162 taagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataa 227  Q
    ||||||||||| |  |||||||||||||||||||| |||||||| || || |||||||||||||||    
T  45804209 taagtgcttatataaaagttatttctataataaataataaaataaagtcaaactattttcatataa 45804274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 29007848 - 29007785
Alignment:
Q  168 cttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||||||||||||||| ||| || ||| || || || |||||||||||||||||||    
T  29007848 cttatgtctaagttatttctataacaaaagaaaaattaaagtcaaactattttcatataagcta 29007785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 4202277 - 4202227
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaa 202  Q
    |||||||||||||||||||| || |||||||||||||||| ||| ||||||    
T  4202277 gtttatcatataagtgcttaagtataagttatttctataacaaaagataaa 4202227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 48830207 - 48830098
Alignment:
Q  169 ttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagctagtatacactattttcat-agctatcctagagagctta 267  Q
    |||||| |||||||||||||| |  || ||||||||| || || |||||||||||||||||   |||| ||| ||||||| |||||| ||| |||||| |    
T  48830207 ttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagc---tataaactgttttcataagctattctaaagagctaa 48830111  T
Q  268 tggaaataagcta 280  Q
    | |||||||||||    
T  48830110 tagaaataagcta 48830098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 45107548 - 45107620
Alignment:
Q  155 tatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    |||||||||||||||||| | |||| ||||||||||| |||  |||||||| || || ||||||||||||||||    
T  45107548 tatcatataagtgcttatctataagctatttctataagaaa-aataaaataaagtcaaactattttcatataag 45107620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 45234118 - 45234191
Alignment:
Q  151 tgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcata 224  Q
    |||||||||||| ||||||| |||  | ||||||||||||||||| ||||||||| || || | ||||||||||    
T  45234118 tgtttatcatatgagtgcttttgtacatgttatttctataataaaagataaaataaagtcaaattattttcata 45234191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 15360827 - 15360895
Alignment:
Q  163 aagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||| |||||| | |||||||||||||| ||| ||||||||| || || ||| |||||||||||||||    
T  15360827 aagtgtttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagcta 15360895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 349
Target Start/End: Original strand, 44422716 - 44422815
Alignment:
Q  249 agctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgttta 348  Q
    ||||||||| ||||||||||| |||||||||  |  | | ||||||||||||| |||| |||||| | ||||||||| || | ||||||| |||||||||    
T  44422716 agctatcctggagagcttatgaaaataagctgtagtcag-cttatggacatgtcataagctattttcataagctctcccagacagtctcaaaagtgttta 44422814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 16980750 - 16980801
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    ||||||||||||||||||||| ||||| ||||||| || ||||| |||||||    
T  16980750 ttatcatataagtgcttatgtataagtcatttctacaaaaaatggtaaaata 16980801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 46980276 - 46980201
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    |||||||||||||||| ||||  |||||| ||| ||||  ||| ||||||||| ||||| ||| ||||||||||||    
T  46980276 tttatcatataagtgcatatgcataagttgtttttatatcaaaagataaaataaagacaaactgttttcatataag 46980201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 49557065 - 49557116
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    ||||||||||||||||  ||| |||||||||||||||| ||| |||||||||    
T  49557065 ttatcatataagtgctgctgtataagttatttctataacaaaagataaaata 49557116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 44936713 - 44936659
Alignment:
Q  177 aagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||||||| ||| ||||| ||| || || |||||||||||||||||||    
T  44936713 aagttatttctataacaaaagataagataaagtcaaactattttcatataagcta 44936659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 52190057 - 52190099
Alignment:
Q  149 tgtgtttatcatataagtgcttatgtctaagttatttctataa 191  Q
    ||||||||||||||||||| |||||| |||||| |||||||||    
T  52190057 tgtgtttatcatataagtgtttatgtataagttttttctataa 52190099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 13037791 - 13037836
Alignment:
Q  157 tcatataagtgcttatgtctaagttatttctataataaatgataaa 202  Q
    |||||||||||||||||| |||| ||||||||||| ||| ||||||    
T  13037791 tcatataagtgcttatgtataagctatttctataacaaaagataaa 13037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 15489355 - 15489427
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatat 225  Q
    ||||||||| ||||||||||||| |||| ||||||| | | ||||||| ||||| || || |||||||||||||    
T  15489355 gtttatcatttaagtgcttatgtataagctatttctgtgacaaatgat-aaataaagtcaaactattttcatat 15489427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 43372105 - 43372028
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||  |||||||| || | ||||||||||| ||  |||||||||||| || | |||||||| ||||||||    
T  43372105 ttatcatataatggcttatgtataggctatttctataacaatagataaaatagagtcaaattattttcacataagcta 43372028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 52286602 - 52286679
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||| |||||||  |||| |||||||| || ||| ||||||||| ||  | || ||||||||||||||||    
T  52286602 ttatcatataagcgcttatgaataagatatttctacaacaaaagataaaataaagttaaacaattttcatataagcta 52286679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 11639462 - 11639395
Alignment:
Q  256 ctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctct 324  Q
    |||||||||||||| |||||||||| ||||  |||||||||||||| |||| || ||| | ||||||||    
T  11639462 ctagagagcttatgaaaataagctaaaaac-agcttatggacatgtcataagctgttttcataagctct 11639395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 17269177 - 17269249
Alignment:
Q  157 tcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagc 229  Q
    |||||||||||||||||| ||||||||||||| || ||| |  |||||| || || | | |||||||||||||    
T  17269177 tcatataagtgcttatgtataagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagc 17269249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 38651559 - 38651507
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaa 202  Q
    ||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||    
T  38651559 gtgtttatcatgtaagtgcttatgtataagctaattctataacaaaagataaa 38651507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 43420315 - 43420375
Alignment:
Q  290 ttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgtttatg 350  Q
    ||||| |||||| |||| || ||||| |||| ||||||||  |||||||||||||||||||    
T  43420315 ttatgaacatgtcataagctgtttccataagatctcacaagcagtctcacaagtgtttatg 43420375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 45769882 - 45769838
Alignment:
Q  161 ataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||||||||| ||| |||||||||||| ||| |||||||||    
T  45769882 ataagtgcttatgtgtaaattatttctataacaaaagataaaata 45769838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 48282057 - 48282125
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataata-aatgataaaatagagacagactattttc 221  Q
    |||||||||||||||||||||  ||| ||||||||||| | || ||||||||| || || |||||||||    
T  48282057 ttatcatataagtgcttatgtaaaagctatttctataaaagaaagataaaataaagtcaaactattttc 48282125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 285
Target Start/End: Original strand, 4558720 - 4558851
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagctagtatacactattttcat-ag 250  Q
    |||||| || |||||| |||||| |||| ||||||||||||||| ||||||||| ||  | | |||||||||||| ||   ||||  || ||| ||| ||    
T  4558720 gtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagttaaattattttcatatatgc---tataagctgtttccataag 4558816  T
Q  251 ctatcctagagagcttatggaaataagctacaaac 285  Q
    |||||||||||||||||||||||||| ||| ||||    
T  4558817 ctatcctagagagcttatggaaataaactaaaaac 4558851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 3645966 - 3645885
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||||||||||||| ||| |||| ||||||||||| |||  |||||| | |  || |||||||||||||||||||    
T  3645966 gtgtttatcatataagtgcttgtgtataagctatttctataagaaaatataaaacaaaatcaaactattttcatataagcta 3645885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 276
Target Start/End: Complemental strand, 11188297 - 11188181
Alignment:
Q  158 catataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagctagtatacactattttcat-agctatcc 256  Q
    ||||||||||||||||| |||||| ||||||||| ||| ||||||||| |  || |||||||| |||| ||    |||| |||||||| || ||||||||    
T  11188297 catataagtgcttatgtataagttgtttctataacaaaagataaaataaaaccaaactatttttatattag---ttataaactattttgataagctatcc 11188201  T
Q  257 tagagagcttatggaaataa 276  Q
    ||||||| |||||| |||||    
T  11188200 tagagagtttatggtaataa 11188181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 350
Target Start/End: Complemental strand, 28769485 - 28769292
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagctagtatacactattttcat-agct 252  Q
    ||||||||||| ||||||||| |||| |||| |||||| |||  |||||||  || || ||||||||| |||||||   ||||  || ||||||| ||||    
T  28769485 ttatcatataaatgcttatgtataagctattcctataacaaactataaaattaagtcaaactattttcttataagc---tataagctgttttcataagct 28769389  T
Q  253 atcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgtttatg 350  Q
    ||  | ||||| |||||||||||||||  ||||   ||||||||||| | |||  |||||| |  |||||||| |||||| ||||||||||| |||||    
T  28769388 attttggagagtttatggaaataagctgaaaac-aacttatggacatatcatatgctatttacacaagctctctcaaataatctcacaagtgcttatg 28769292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 29170091 - 29170036
Alignment:
Q  149 tgtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaat 204  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||  ||||||||    
T  29170091 tgtgtttatcatataagtgcttatgtataagttctttctataagaatagataaaat 29170036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 34563173 - 34563244
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcata 224  Q
    |||||||||||||||||||| | |||||||||||||| | ||| ||||||||| || || || |||||||||    
T  34563173 tttatcatataagtgcttatatataagttatttctatgacaaaggataaaataaagtcaaacaattttcata 34563244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 1117270 - 1117346
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||||| |||||| |||||| |||||||||  |||||||||||| || || |  ||||||||||||||||    
T  1117270 ttatcatataagtgattatgtgtaagttgtttctataacgaatgataaaatacaggca-aaaattttcatataagcta 1117346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 1433469 - 1433510
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaa 195  Q
    |||||||||||||| |||||| ||||||||||||||||||||    
T  1433469 ttatcatataagtggttatgtataagttatttctataataaa 1433510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 9700027 - 9700118
Alignment:
Q  258 agagagcttatggaaataagctacaaacgggcttatggacatgtgataaact-atttccctaagctctcacaaatagtctcacaagtgtttatg 350  Q
    |||||||||||| ||||||| |  |||| | ||||||||||||| ||||| | ||||| | |||||||| ||||||||||||||||||||||||    
T  9700027 agagagcttatgaaaataaggtgaaaacag-cttatggacatgtcataaattgatttcac-aagctctctcaaatagtctcacaagtgtttatg 9700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 350
Target Start/End: Original strand, 14949883 - 14949983
Alignment:
Q  249 agctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgttta 348  Q
    |||||||||| |||| |||| ||||||||||  |||| | ||||||||||||| ||||  ||||| | |||||||||  ||| |||||||||| ||||||    
T  14949883 agctatcctaaagagattatagaaataagctgaaaacag-cttatggacatgtcataagttattttcataagctctcctaaacagtctcacaaatgttta 14949981  T
Q  349 tg 350  Q
    ||    
T  14949982 tg 14949983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 350
Target Start/End: Original strand, 21130641 - 21130729
Alignment:
Q  259 gagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgtttatg 350  Q
    |||||||||||||||||||||  |||| |    |||||||||| | || |||||||| ||||||||| |||| |||||||||||| ||||||    
T  21130641 gagagcttatggaaataagctcaaaacagc---atggacatgtcaaaagctatttccataagctctctcaaacagtctcacaagtatttatg 21130729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 29699177 - 29699229
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||||||| |||||||||  ||||||||||||||| ||| |||||||||    
T  29699177 tttatcatataaatgcttatgtacaagttatttctataacaaaagataaaata 29699229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 14482126 - 14482177
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    ||||||||||||||||||||| |||  ||||||||||| ||| |||||||||    
T  14482126 ttatcatataagtgcttatgtataaactatttctataacaaaagataaaata 14482177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 14949811 - 14949882
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcata 224  Q
    ||||||||| |||| ||||||| |||| || |||||||| ||| |||||||||||| || ||| ||||||||    
T  14949811 tttatcatacaagttcttatgtataagctacttctataacaaaagataaaatagagtcaaactcttttcata 14949882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 35535007 - 35534956
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    ||||||||||||||||||| | |||| ||||||||||||||| | |||||||    
T  35535007 ttatcatataagtgcttatatataagctatttctataataaaagttaaaata 35534956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 10075615 - 10075573
Alignment:
Q  239 ctattttcata-gctatcctagagagcttatggaaataagcta 280  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  10075615 ctattttcataagctatcctagagagcttatgaaaataagcta 10075573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 6918951 - 6918992
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataa 191  Q
    ||||||||||||||||||||||||| |||| ||||| |||||    
T  6918951 gtgtttatcatataagtgcttatgtataagctatttttataa 6918992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 8629029 - 8629070
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataa 191  Q
    ||||||||||||||||||||||| | |||| |||||||||||    
T  8629029 gtgtttatcatataagtgcttatttataagctatttctataa 8629070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 23996681 - 23996644
Alignment:
Q  248 tagctatcctagagagcttatggaaataagctacaaac 285  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  23996681 tagctatcctagagagcttatgaaaataagctaaaaac 23996644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 326
Target Start/End: Complemental strand, 26473805 - 26473729
Alignment:
Q  249 agctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctca 326  Q
    ||||||||||||||||||||| ||||||| || ||||  |||||| ||||||| |||| || ||| | ||||||||||    
T  26473805 agctatcctagagagcttatgaaaataagtta-aaactagcttatagacatgtcataagctgttttcataagctctca 26473729  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 26813951 - 26813914
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataa 191  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  26813951 ttatcatataagtgcttatgtataaattatttctataa 26813914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 1470985 - 1470925
Alignment:
Q  171 atgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||| |||| ||||||||||||||| ||||||||| || || | || ||||||||||||||    
T  1470985 atgtataagctatttctataataaaagataaaataaagtcaaattactttcatataagcta 1470925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 325
Target Start/End: Original strand, 5088873 - 5088944
Alignment:
Q  253 atcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctc 325  Q
    ||||| |||||||||| |||||||| |  |||| | ||||||||||||| ||||||| ||||| |||||||||    
T  5088873 atcctggagagcttattgaaataagttgaaaacag-cttatggacatgttataaactgtttccataagctctc 5088944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 13652135 - 13652175
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctata 190  Q
    ||||||||||| ||||||||||||| |||| ||||||||||    
T  13652135 gtgtttatcatctaagtgcttatgtataagctatttctata 13652175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 13710778 - 13710818
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctata 190  Q
    ||||||||||| ||||||||||||| |||| ||||||||||    
T  13710778 gtgtttatcatctaagtgcttatgtataagctatttctata 13710818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 14929256 - 14929192
Alignment:
Q  160 tataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcata 224  Q
    |||||||||||| |  |||| ||||||||||||||| || ||||||||| || ||| ||||||||    
T  14929256 tataagtgcttacgcataagctatttctataataaaagacaaaatagagtcaaactgttttcata 14929192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 35298625 - 35298573
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||||||||||||||||| |||| ||||||  ||| ||| |||||||||    
T  35298625 tttatcatataagtgcttatgtataagctatttcagtaacaaaagataaaata 35298573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 40356798 - 40356846
Alignment:
Q  157 tcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||||||||||| | |||| ||||| ||||||||| |||||||||    
T  40356798 tcatataagtgcttatctataagctatttatataataaaagataaaata 40356846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 279
Target Start/End: Original strand, 38462205 - 38462328
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagctagtatacactattttcat-agct 252  Q
    |||||||||||||| |||| | |||| ||||||||||  ||| ||||||||| || || ||| |||||||||| ||   |||| ||| ||||||| ||||    
T  38462205 ttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgc---tataaactgttttcataagct 38462301  T
Q  253 atcctagagagcttatggaaataagct 279  Q
    |||| ||| ||||||||||||||||||    
T  38462302 atccaagatagcttatggaaataagct 38462328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 27792794 - 27792872
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagct 230  Q
    ||||||||||||||||||||||| |||| |||||| | || ||| |||||||||  | || ||||||||||||||||||    
T  27792794 gtttatcatataagtgcttatgtataagctatttcaaaaacaaaagataaaataaggtcaaactattttcatataagct 27792872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 16790236 - 16790183
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    ||||||||||||||||||||| | |||||||||||||||| ||| |||||||||    
T  16790236 gtttatcatataagtgcttatatataagttatttctataacaaaagataaaata 16790183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 22232750 - 22232824
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    ||||||||||| |||| |||| |||| ||||| ||||| ||||||||||||| || || ||| ||||||||||||    
T  22232750 ttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 349
Target Start/End: Complemental strand, 30923949 - 30923853
Alignment:
Q  251 ctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgtttat 349  Q
    ||||||||||||| |||| ||||||||||  |||| | ||||| ||||||| |||| || ||||| || ||||||| ||| ||||||||||||||||||    
T  30923949 ctatcctagagagtttatagaaataagctgaaaacag-cttatagacatgtcataagctgtttccata-gctctcataaacagtctcacaagtgtttat 30923853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 24158645 - 24158604
Alignment:
Q  157 tcatataagtgcttatgtctaagttatttctataataaatga 198  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  24158645 tcatataagtgcttatgtataagttatttctataacaaatga 24158604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 41028997 - 41028920
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| || |||||| || ||  || |||||| ||||||||    
T  41028997 ttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataagcta 41028920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 54775052 - 54775125
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataa 227  Q
    |||||||| ||||||||| || |||||||||||||||| ||| ||||||||| || || || ||||| ||||||    
T  54775052 ttatcataaaagtgcttacgtttaagttatttctataacaaaagataaaataaagtcaaaccatttttatataa 54775125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 1395604 - 1395672
Alignment:
Q  163 aagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||| ||||| |||| ||||||||||| ||| ||||||||| || || | |||||||||||||||||    
T  1395604 aagtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagcta 1395672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 43116577 - 43116497
Alignment:
Q  151 tgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||  |  || || ||||||||||||||||    
T  43116577 tgtttatcatacaagtgtttatgtgtaagctatttctataacaaaagataaaatcaaatcaaacaattttcatataagcta 43116497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 20143871 - 20143921
Alignment:
Q  176 taagttatttctataataaatgataaaatagagacagactattttcatataa 227  Q
    |||||||||||||||||||| ||||||||| || || |||||||||||||||    
T  20143871 taagttatttctataataaaagataaaata-agtcaaactattttcatataa 20143921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 23269318 - 23269268
Alignment:
Q  176 taagttatttctataataaatgataaaatagagacagactattttcatataa 227  Q
    |||||||||||||||||||| ||||||||| || || |||||||||||||||    
T  23269318 taagttatttctataataaaagataaaata-agtcaaactattttcatataa 23269268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 39971243 - 39971294
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    ||||||||||||||||||||| ||||||| || ||||| ||| |||||||||    
T  39971243 ttatcatataagtgcttatgtataagttacttatataacaaaagataaaata 39971294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 1810036 - 1810094
Alignment:
Q  292 atggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgtttatg 350  Q
    |||||||||| ||||  | ||||| ||||||||| |||||||||||||||||| |||||    
T  1810036 atggacatgtcataagttgtttccgtaagctctctcaaatagtctcacaagtgattatg 1810094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 14548865 - 14548819
Alignment:
Q  149 tgtgtttatcatataagtgcttatgtctaagttatttctataataaa 195  Q
    |||||||||||| |||||||| ||||  |||||||||||||||||||    
T  14548865 tgtgtttatcatttaagtgctaatgtaaaagttatttctataataaa 14548819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 20174029 - 20173983
Alignment:
Q  159 atataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||||||||||| | |||||||||||||| ||| |||||||||    
T  20174029 atataagtgcttatgtattagttatttctataacaaaagataaaata 20173983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 28283725 - 28283675
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaa 202  Q
    ||||||||||||||||||||||  ||||||| |||||||| ||| ||||||    
T  28283725 gtttatcatataagtgcttatgcataagttacttctataacaaaagataaa 28283675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 32703061 - 32703139
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||| || |||||| |||| ||||||||| ||||| ||||||||| |  || | | |||||||||||||||    
T  32703061 tttatcatataaatgtttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagcta 32703139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 2304380 - 2304335
Alignment:
Q  161 ataagtgcttatgtctaagttatttctataataaatgataaaatag 206  Q
    ||||||| |||||| |||| ||||||||||||||| ||||||||||    
T  2304380 ataagtgattatgtataagctatttctataataaaagataaaatag 2304335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 20504136 - 20504185
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaa 203  Q
    ||||||| |||||||||||| ||||| || |||||||| |||||||||||    
T  20504136 ttatcatttaagtgcttatgcctaagctacttctataacaaatgataaaa 20504185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 49587057 - 49586985
Alignment:
Q  158 catataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||||||  | |||| ||||||||||| ||| ||||||||| || || ||| |||||||||||||||    
T  49587057 catataagtgcttac-tataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagcta 49586985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 53736250 - 53736185
Alignment:
Q  163 aagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    ||||||||| || | |||||||||||||| ||| |||||||||  | || ||||||||||||||||    
T  53736250 aagtgcttacgtatgagttatttctataacaaaagataaaataatgtcaaactattttcatataag 53736185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 16790503 - 16790451
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||||||||||||||||| |||| ||||| ||||| ||  |||||||||    
T  16790503 tttatcatataagtgcttatgtataagctatttttataacaacagataaaata 16790451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 25185913 - 25185965
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaa 202  Q
    ||||||||||||||||||||||||  |||| ||||| ||||| ||| ||||||    
T  25185913 gtgtttatcatataagtgcttatgaataagatatttatataacaaaagataaa 25185965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 42540 - 42595
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagag 208  Q
    |||||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||    
T  42540 tttatcatataagtgcttatgtataagtcatttctataacaaaagataaaatagag 42595  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 4663844 - 4663766
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagct 230  Q
    ||||||| ||||||||||||||| |||||||||||||||| |||  |||||||  || || |||||||| |||||||||    
T  4663844 gtttatcgtataagtgcttatgtataagttatttctataacaaagaataaaatgaagccaaactatttttatataagct 4663766  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 320
Target Start/End: Complemental strand, 54325183 - 54325020
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagctagtatacactattttcata-gct 252  Q
    ||||||||||||||||| ||| |||  ||||||||| | ||| ||||||||| || || ||| |||||||||||||||   ||  ||||||||| | |||    
T  54325183 ttatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagcta---taagctattttcaaaagct 54325087  T
Q  253 atcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaag 320  Q
    ||| | ||||| ||||||| |||| ||  |||| | ||||||||||| | ||||||||||||| ||||    
T  54325086 atcatggagagtttatggagataaactgaaaacag-cttatggacatatcataaactatttccgtaag 54325020  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 32724046 - 32724118
Alignment:
Q  157 tcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagc 229  Q
    |||||| |||||||||||||||  ||||||||| | ||| ||||||||| || || |||||||||||||||||    
T  32724046 tcatatcagtgcttatgtctaatctatttctattacaaaagataaaataaagtcaaactattttcatataagc 32724118  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 4191661 - 4191712
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaa 203  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||| |||||||    
T  4191661 gtttatcatataagtgcttatgtataagctatttctataacaaaagataaaa 4191712  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 30024622 - 30024701
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||||||| ||||||  |||||||||||||||| ||| ||||||||| ||  | | | |||||||||||||||    
T  30024622 gtttatcatataagtacttatgcataagttatttctataacaaaagataaaataaagtaaaattgttttcatataagcta 30024701  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 36734816 - 36734890
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataa 227  Q
    |||||||||||||||||||||| |||  | ||||||||| ||| | ||||||| || || |||||||||||||||    
T  36734816 tttatcatataagtgcttatgtataatctctttctataacaaaaggtaaaataaagtcaaactattttcatataa 36734890  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 2980621 - 2980580
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataa 191  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  2980621 gtgtttatcatataagtgcttatgtataagctatttctataa 2980580  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 5219646 - 5219573
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataa 227  Q
    |||||||||||||||| |||| || | ||| ||||||||||| ||||||||| ||  | |||||||||||||||    
T  5219646 ttatcatataagtgctcatgtatatgctatctctataataaaagataaaataaagttaaactattttcatataa 5219573  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 334
Target Start/End: Original strand, 14011251 - 14011335
Alignment:
Q  249 agctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagt 334  Q
    ||||||| | |||||||||||||||||||||  |||| | ||||  ||||||||||||||| ||| | ||||||||| ||||||||    
T  14011251 agctatcttggagagcttatggaaataagctgaaaacag-cttaaagacatgtgataaactctttgcataagctctcccaaatagt 14011335  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 19422342 - 19422415
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataa 227  Q
    ||||||||||| ||||||||| |||||||||||||||| ||| |||| |||| || || ||  |||||||||||    
T  19422342 ttatcatataaatgcttatgtataagttatttctataacaaaagatataataaagtcaaacatttttcatataa 19422415  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 47970245 - 47970310
Alignment:
Q  157 tcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttca 222  Q
    |||||||||||||||||| |||| ||||||||||| ||| ||||||||  || || ||||||||||    
T  47970245 tcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttca 47970310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 49219063 - 49219140
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||| |||| ||| || |||||||||||||||| |||  |||||||| || || | |||||||||||||||||    
T  49219063 ttatcatatgagtggttaggtataagttatttctataacaaaatataaaataaagtcaaattattttcatataagcta 49219140  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 333
Target Start/End: Original strand, 21952965 - 21953048
Alignment:
Q  249 agctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatag 333  Q
    |||||||||| |||||||| |||||||| ||| |||| || |||||||||||| ||||  | ||||| ||||||||| |||||||    
T  21952965 agctatcctatagagcttaaggaaataaactaaaaacagg-ttatggacatgtcataagttctttccataagctctcccaaatag 21953048  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 24193509 - 24193583
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataag 228  Q
    ||||||||||||| ||||||| |||||||||| || || |||  |||||| ||||  | ||||||||||||||||    
T  24193509 ttatcatataagtacttatgtataagttatttttacaacaaaatataaaacagagttaaactattttcatataag 24193583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 28623218 - 28623264
Alignment:
Q  159 atataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||||||||||| |||||||||| ||||| ||| |||||||||    
T  28623218 atataagtgcttatgtataagttatttatataacaaaagataaaata 28623264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 21593149 - 21593081
Alignment:
Q  162 taagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||||| |||  |||||||||||  || ||||||||| || || |||||||||||||||||||    
T  21593149 taagtgcttatgtataaactatttctataactaaagataaaataaagtca-actattttcatataagcta 21593081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 25717434 - 25717483
Alignment:
Q  162 taagtgcttatgtctaagttatttctataataaatgataaaatagagaca 211  Q
    ||||||||||||| ||||||||||||| ||| || ||||||||| |||||    
T  25717434 taagtgcttatgtataagttatttctagaatgaaagataaaataaagaca 25717483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 30207716 - 30207640
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||||||||||||| || |||| |||||||| |||  |||||||| |  || ||| |||||||||||||||    
T  30207716 ttatcatataagtgcttatgtatatgttagttctataacaaaaaataaaata-aatcaaactgttttcatataagcta 30207640  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 44319874 - 44319950
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    |||||||||||||||| |||| |||  ||||||||||| ||| ||||||||| || |  ||| |||||||||||||||    
T  44319874 ttatcatataagtgctcatgtataaactatttctataa-aaaagataaaataaagtcgaactgttttcatataagcta 44319950  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 53315349 - 53315429
Alignment:
Q  255 cctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtct 336  Q
    ||||||||||||||| ||||||| || |||  | |||||||||||||||||   | ||| | ||||||||||||||||||||    
T  53315349 cctagagagcttatgaaaataagttaaaaatag-cttatggacatgtgatatgttgttttcataagctctcacaaatagtct 53315429  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 7022590 - 7022662
Alignment:
Q  152 gtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcata 224  Q
    |||| |||||||||||||||  | |||| ||||| ||||| ||| |||||||||||| || | ||||||||||    
T  7022590 gtttctcatataagtgcttaattataagctatttttataagaaaagataaaatagagtcaaattattttcata 7022662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 8130103 - 8130175
Alignment:
Q  159 atataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagcta 231  Q
    ||||||||||||| || | |||| ||||||||| ||| ||||| ||| || || | |||||||||||||||||    
T  8130103 atataagtgcttacgtatgagttctttctataacaaaagataacataaagtcaaattattttcatataagcta 8130175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 22684662 - 22684586
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataagct 230  Q
    ||||||||||| ||||| ||| |||| ||||||||||| ||| | ||||||| || || | | ||||||||||||||    
T  22684662 ttatcatataaatgcttctgtataagctatttctataacaaacggtaaaataaagtcaaattgttttcatataagct 22684586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 27321977 - 27321941
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctata 190  Q
    |||||||||||||| |||||| |||||||||||||||    
T  27321977 ttatcatataagtgtttatgtataagttatttctata 27321941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 39929908 - 39929856
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||| ||||||||||||| |||||| ||||||| ||||| | |||||||    
T  39929908 tttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 39929856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 51556014 - 51555962
Alignment:
Q  153 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 205  Q
    |||||||||||||||||||||| |||| ||||  ||||| ||| |||||||||    
T  51556014 tttatcatataagtgcttatgtataagctattattataacaaaagataaaata 51555962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 349
Target Start/End: Complemental strand, 160026 - 159927
Alignment:
Q  249 agctatcctagagagcttatggaaataagctacaaacgggcttatggacatgtgataaactatttccctaagctctcacaaatagtctcacaagtgttta 348  Q
    |||||||||| ||||||| ||||||||||||  |||| | ||||| ||||||| ||||||| ||||| | || ||||  ||||||| |||||||||||||    
T  160026 agctatcctaaagagcttgtggaaataagctgaaaactg-cttatagacatgtcataaactgtttccattagttctccaaaatagtttcacaagtgttta 159928  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 27500 - 27573
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagacagactattttcatataa 227  Q
    ||||||| ||||||||||||| |||||||||||||||| | | ||||||||| || || | | |||||||||||    
T  27500 ttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataa 27573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 9921 - 9871
Alignment:
Q  154 ttatcatataagtgcttatgtctaagttatttctataataaatgataaaat 204  Q
    |||||||||| |||||||||| |||||||||||||||| |||  |||||||    
T  9921 ttatcatataggtgcttatgtataagttatttctataacaaaaaataaaat 9871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 63435 - 63374
Alignment:
Q  150 gtgtttatcatataagtgcttatgtctaagttatttctataataaatgataaaatagagaca 211  Q
    ||||||||||||||||||||| | | |||| ||||| ||||| ||| ||||||||| |||||    
T  63435 gtgtttatcatataagtgcttgtttataagctatttttataacaaaagataaaataaagaca 63374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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