View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15801_low_5 (Length: 339)
Name: NF15801_low_5
Description: NF15801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15801_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 43408636 - 43408302
Alignment:
| Q |
1 |
catgtatgtttctaacatttgttattttaatttcaagaagaagtaacatacatgtatacctcaagagcattagagagatgatcaagttgtggacggtaat |
100 |
Q |
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| T |
43408636 |
catgtatgtttctaacatttgttaatttaatttcaagaagaagtaacaaacat----acctcaagagcattagagagatgatcaagttgtggacggtaat |
43408541 |
T |
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| Q |
101 |
tgatgagggtttgattggagataacaaactcaataacaccaaggcatgtcccacttcctctctcaaaaactggaagtgctagaagagatccatattgctg |
200 |
Q |
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| T |
43408540 |
tgatgagggtttgattggagataacaaactcaataacaccaaggcatgtcccacttcctctctcaaaaactggaagtgctagaagagatccatattgctg |
43408441 |
T |
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| Q |
201 |
ttgctgctgatgacgcggatagtcatggcttctaaagaaacgaacatgaacgttcatgtttggattcacagaaacaggtgcagatgatgtctcctgctga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43408440 |
ttgctgctgatgacgcggatagtcatggcttctaaagaaacgaacatgaacgttcatgtttggattcacagaaacaggtgcagatgatgactcctgctga |
43408341 |
T |
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| Q |
301 |
aggaggtggttttgtgtgtgaattagggctgatctcctc |
339 |
Q |
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||| ||||||||| |||||||||||||||||||||||| |
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| T |
43408340 |
aggtagtggttttgagtgtgaattagggctgatctcctc |
43408302 |
T |
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