View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15802_high_2 (Length: 454)
Name: NF15802_high_2
Description: NF15802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15802_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 93 - 376
Target Start/End: Original strand, 32800817 - 32801105
Alignment:
| Q |
93 |
tatattacataattcaaagtcaaacactaaaatatggttgataagttagcatactcattatagttggaaagaaacagaaatcccagaggtgattcttatt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32800817 |
tatattacataattcaaagtcaaacactaaaatatggttgataagttagcatactcattatagttgaaaagaaacagaaatcccagaggtgattcttatt |
32800916 |
T |
|
| Q |
193 |
tcatattttatttcactaccagaaaaagttgaaataacaacaaaatatggatacagaaaaagtaaaattggtaactaa-----acgtcgataacacttag |
287 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32800917 |
tcatattttatttcattaccagaaaaagttgaaataacaacaaaatatggatacagaaaaagtaaaattggtaactaaacttgacgtcgataacacttag |
32801016 |
T |
|
| Q |
288 |
cgacaaaattagagacgagttttgcattttccgtctctaaatttttatagctatttcaacttgttctagccctctggtgagtgagaatt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32801017 |
cgacaaaattagagacgagttttgcattttccgtctctaaatttttatagctatttcaacttgttctagccctctggtgagtgagaatt |
32801105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 32800750 - 32800817
Alignment:
| Q |
1 |
ataggagttatctatcctacctagttagtgtccacttttgatttaggggtgaaactctttcaaacctt |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32800750 |
ataggagttatctatcctacctagttagtgtccacttttgatttaggggtgaaactctttcaaacctt |
32800817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 43005727 - 43005759
Alignment:
| Q |
205 |
tcactaccagaaaaagttgaaataacaacaaaa |
237 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
43005727 |
tcactaccacaaaaagttgaaataacaacaaaa |
43005759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 2213748 - 2213672
Alignment:
| Q |
278 |
taacacttagcgacaaaattagagacgagttttgcattttccgtctctaaatttttatagctatttcaacttgttct |
354 |
Q |
| |
|
|||||||||||| ||||||||||||||| | || ||| || ||||||||||||| | ||||||| ||||| |||| |
|
|
| T |
2213748 |
taacacttagcgtcaaaattagagacgaatattacatgttttgtctctaaattttcgtcgctattttaactttttct |
2213672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University