View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15802_high_4 (Length: 399)
Name: NF15802_high_4
Description: NF15802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15802_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 33 - 378
Target Start/End: Complemental strand, 45546703 - 45546358
Alignment:
| Q |
33 |
atgtggaaggggagaacgatgaacaaaactcacctaacgttgaaccatatccaggtatcatatcattttgtttgaagcaagagttaatatatactatact |
132 |
Q |
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| T |
45546703 |
atgtggaaggggagaacgatgaacaaaactcacctaacgttgaaccatatccaggtatcatatcattttgtttgaagcaagagttaatatatactatact |
45546604 |
T |
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| Q |
133 |
tggtagtttttaagtttgaagcannnnnnnctactttatttgaatctattttggatgcagtgacattgacacatggaccagaagagcccactgagcctga |
232 |
Q |
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| T |
45546603 |
tggtagtttttaagtttgaagcatttttttctactttatttgaatctattttggatgaagtgacactgacacatggaccagaagagcccactaattctga |
45546504 |
T |
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| Q |
233 |
gcctgagcctgagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcat |
332 |
Q |
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| T |
45546503 |
gcctgagcctgagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcat |
45546404 |
T |
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| Q |
333 |
ggtagtggacatgacactgaaactcagcatattcctgatgatgatg |
378 |
Q |
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| T |
45546403 |
ggtagtggacatgacactgaaactcagcatattcctgatgatgatg |
45546358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 374
Target Start/End: Complemental strand, 45551732 - 45551601
Alignment:
| Q |
243 |
gagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggac |
342 |
Q |
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| T |
45551732 |
gagaagaaatctgttctgaataaggtgaaggcaaaggctaagaaaattaaggacacaattaaaaaacacggtcaacaagtacttgatcatggtaatggac |
45551633 |
T |
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| Q |
343 |
atgacactgaaactcagcatattcctgatgat |
374 |
Q |
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| T |
45551632 |
ataacaatgaaattcagcatactcatgatgat |
45551601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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