View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15803_low_2 (Length: 549)
Name: NF15803_low_2
Description: NF15803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15803_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 10124432 - 10124166
Alignment:
| Q |
17 |
cagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
10124432 |
cagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaaaccggtaattgctgagaagaaaaagaatatcaattg |
10124333 |
T |
|
| Q |
117 |
gttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10124332 |
gttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaat |
10124233 |
T |
|
| Q |
217 |
agggttctttatttgacttatcttgaactttgcaaacaacttgatccttccctacccttgatctaga |
283 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10124232 |
agggttctttatttaacttatcttgaactttgcaaacaacttgatccttccctacccttgatctaga |
10124166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 373 - 532
Target Start/End: Complemental strand, 10124076 - 10123918
Alignment:
| Q |
373 |
ctgcagactctaatttaatgaatttatatttggaaacgtatttcttatgggttcaccaaaagtacaatattaatctgtatatgatttttgtatatgtttt |
472 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10124076 |
ctgcagactctattttta-gaatttatatttggaaacgtatttcttatgggttcaccaaaagtacaatattaatctgtatatgatttttgtatatgtttt |
10123978 |
T |
|
| Q |
473 |
gtttctgaatccggttaaattctccttgtatacaatgatccttatcaaagtatatgtgtt |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10123977 |
gtttctgaatccggttaaattctccttgtatacaatgatccttatcaaagtatatgtgtt |
10123918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 58 - 262
Target Start/End: Complemental strand, 28649992 - 28649788
Alignment:
| Q |
58 |
tgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagc |
157 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||| || | |
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|
| T |
28649992 |
tgcaatcgtgaaaacaatgtgaagccgataattgctgagaagaaaaagaatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatc |
28649893 |
T |
|
| Q |
158 |
ttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgcc-aagaatagggttctttatttgacttatcttgaactttgcaaacaac |
256 |
Q |
| |
|
|| |||||||||| ||||||||||||||||| | ||||||| ||| | |||| || ||||| ||||||||||| |||||||||||||| |||||| ||| |
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|
| T |
28649892 |
ttaaacaattgaagtatttttgcaagtataacaaccatcatagaa-caatgccaaaaaatagagttctttatttaacttatcttgaactatgcaaataac |
28649794 |
T |
|
| Q |
257 |
ttgatc |
262 |
Q |
| |
|
|||||| |
|
|
| T |
28649793 |
ttgatc |
28649788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 55 - 266
Target Start/End: Original strand, 21393062 - 21393273
Alignment:
| Q |
55 |
cattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgta |
154 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| | |
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|
| T |
21393062 |
cattgcaatcaagaaaacagtgtgaaaccggtaattgccgagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgca |
21393161 |
T |
|
| Q |
155 |
agcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttctttatttgacttatcttgaactttgcaaaca |
254 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||| |||| |
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|
| T |
21393162 |
agcttgaacaattgaagtatttttgcaagtacaacaatcatcatcgaaccggtgccaagaatagagttctttatttgacttattttgaattatgccaaca |
21393261 |
T |
|
| Q |
255 |
acttgatccttc |
266 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21393262 |
acttgatccttc |
21393273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 21422334 - 21422587
Alignment:
| Q |
17 |
cagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattg |
116 |
Q |
| |
|
|||||| ||||||| |||||| |||| || |||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
21422334 |
cagagaatttgatgaatccaaaattgcctaaatgtgtgcattgcaatcaagaaaacagtgtcaagccaataattgctgagaagaaaaagaatatctattg |
21422433 |
T |
|
| Q |
117 |
gttgtttctgttgct----aggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaa |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| | |||||||| || |||||||| |
|
|
| T |
21422434 |
gttgtttctgttgctggccgggacaaatgcttggttgttgcaagcttgaacatttgaagtatttttgcaagtataacaatcatcatcgcacaggtgccaa |
21422533 |
T |
|
| Q |
213 |
gaatagggttctttatttgacttatcttgaactttgcaaacaacttgatccttc |
266 |
Q |
| |
|
||||| |||||||||||||||||| ||||| | ||| | |||||||||||||| |
|
|
| T |
21422534 |
gaatacagttctttatttgacttattttgaattatgccaccaacttgatccttc |
21422587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 1975279 - 1975176
Alignment:
| Q |
49 |
tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt |
148 |
Q |
| |
|
||||| |||||||||||| |||| ||||||| || ||||||||| |||||||||||| |||||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
1975279 |
tgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaagaaaaagagtatcaattggttgtttatgttgatgggacaaatgcttggtt |
1975180 |
T |
|
| Q |
149 |
gttg |
152 |
Q |
| |
|
|||| |
|
|
| T |
1975179 |
gttg |
1975176 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 24 - 275
Target Start/End: Complemental strand, 25044549 - 25044298
Alignment:
| Q |
24 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgttt |
123 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||| |||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
25044549 |
tttgatgaatccaagattgccaagatgtgtgcattgcaacaaagaaaacagtgtgaagccgataattgccgagaagaagaagaatatcaattggttgttt |
25044450 |
T |
|
| Q |
124 |
ctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttc |
223 |
Q |
| |
|
||| || | ||||||||||| |||||||| || ||| |||||||||| ||||||||||||||||| | ||||||| |||| |||||||| |||||||||| |
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|
| T |
25044449 |
ctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaagtataacaaccatcatagaacaggtgccaaaaatagggttc |
25044350 |
T |
|
| Q |
224 |
tttatttgacttatcttgaactttgcaaacaacttgatccttccctaccctt |
275 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
25044349 |
tttatttaacttatcttgaactatgcaaacaacttgatccttctgtaccctt |
25044298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 25040811 - 25040582
Alignment:
| Q |
24 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgttt |
123 |
Q |
| |
|
||||||| |||||| |||| || ||| ||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25040811 |
tttgatgaatccaaaattgccaaaatgtttgcattgcaatcaagaaaatagtgttaaaccggtgattgctgagaagaaaaagaatatcaattggttgttt |
25040712 |
T |
|
| Q |
124 |
ctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttc |
223 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||| || | ||||||||| | |||||||||||||| |||| |
|
|
| T |
25040711 |
ctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagtatttttgcaagtacaacggtcatcatcgagctggtgccaagaatagagttc |
25040612 |
T |
|
| Q |
224 |
tttatttgacttatcttgaactttgcaaac |
253 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |
|
|
| T |
25040611 |
tttatttgacttattttgaactatgcaaac |
25040582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 49 - 262
Target Start/End: Original strand, 54479360 - 54479573
Alignment:
| Q |
49 |
tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt |
148 |
Q |
| |
|
|||||||| || |||||| ||||| |||||||||||||||||||||| |||||| || |||||| ||| |||||||||| |||||||||||||||| | |
|
|
| T |
54479360 |
tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggct |
54479459 |
T |
|
| Q |
149 |
gttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttctttatttgacttatcttgaactttg |
248 |
Q |
| |
|
| || | || | |||| |||| ||||| ||||| | | | ||||| | | |||||||||||||| ||||||||||| |||||||||| ||| || |
|
|
| T |
54479460 |
gctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggactctg |
54479559 |
T |
|
| Q |
249 |
caaacaacttgatc |
262 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
54479560 |
caaacaacttgatc |
54479573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 25042958 - 25042759
Alignment:
| Q |
24 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaag--aatatcaattggttgt |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||| ||| | ||||||| | |||| |||| ||||||||||| |||||||| | | || |
|
|
| T |
25042958 |
tttgatgtatccaagattgctgaagtgtgtgcatt--tatcgagata---gtgtgaaactggtacttgccaagaagaaaaagataatatcaactagatgc |
25042864 |
T |
|
| Q |
122 |
ttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggt |
221 |
Q |
| |
|
|||||||| | |||||||||||||| || || |||||||||| | |||||||| ||| ||||| | ||||||||| ||| ||||||| |||||||| |
|
|
| T |
25042863 |
ttctgttgttgggacaaatgcttggctgctgcaagcttgaaccactgaaatatattttcaagt----caaccatcatcgtaccagtgccaaaaatagggt |
25042768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 24690740 - 24690534
Alignment:
| Q |
24 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgttt |
123 |
Q |
| |
|
||||||| ||||||||||| || ||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
24690740 |
tttgatgaatccaagattgtcaaaatgtgtacattgcaatcaagaaaccaatgtgaagccggtaattattgagaagaaaaagaatatcaattgattgttt |
24690641 |
T |
|
| Q |
124 |
ctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttc |
223 |
Q |
| |
|
||||| || |||||||| |||||||||| |||| |||| |||| | ||||||||||||||||| | ||||||||||| ||||||| |||||| || |
|
|
| T |
24690640 |
ctgtttctgagacaaatgattggttgttgcaagcatgaataattaaggtatttttgcaagtataacaatcatcatcgaacaagtgccaaaaataggtttt |
24690541 |
T |
|
| Q |
224 |
tttattt |
230 |
Q |
| |
|
||||||| |
|
|
| T |
24690540 |
tttattt |
24690534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 39600540 - 39600467
Alignment:
| Q |
109 |
atcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaa |
182 |
Q |
| |
|
||||||||||||||| ||||| | || || ||| |||| ||||| |||||| |||| ||||||||||| ||||| |
|
|
| T |
39600540 |
atcaattggttgtttttgttgttgggtcagatgattgggtgttgcaagcttcaacatttgaaatatttctgcaa |
39600467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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